guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 075dc6ec28283d3535eef4b53030a61340c333cb
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Thu Oct 30 10:52:09 2025 +0000
gnu: python-fastalite: Update to 0.4.1.
* gnu/packages/bioinformatics.scm (python-fastalite): Update to 0.4.1.
[source]: Switch to git-fetch providing test data.
[build-system]: Switch to pyproject-build-system.
[arguments] <tests?>: Enable.
<test-backend>: Use 'unittest.
<phases>: Add set-version.
[native-inputs]: Add python-setuptools.
Change-Id: Ie6659208edb37995303cf332e3b985a89d5e8d39
---
gnu/packages/bioinformatics.scm | 27 ++++++++++++++++++++-------
1 file changed, 20 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 2a1fc96868..3f341ec3c3 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4772,17 +4772,30 @@ sequences, and reconstructing germline sequences.")
(define-public python-fastalite
(package
(name "python-fastalite")
- (version "0.3")
+ (version "0.4.1")
(source
(origin
- (method url-fetch)
- (uri (pypi-uri "fastalite" version))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/nhoffman/fastalite";)
+ (commit version)))
+ (file-name (git-file-name name version))
(sha256
- (base32
- "1qli6pxp77i9xn2wfciq2zaxhl82bdxb33cpzqzj1z25yd036wqj"))))
- (build-system python-build-system)
+ (base32 "19sps1l8k2vp7sj943gccabfkr2h3fn1n93sn28h9gay2ywc41ly"))))
+ (build-system pyproject-build-system)
(arguments
- `(#:tests? #f)) ; Test data is not distributed.
+ (list
+ #:test-backend #~'unittest
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'set-version
+ (lambda _
+ ;; This version file is expected to be created with git describe.
+ (mkdir-p "fastalite/data")
+ (with-output-to-file "fastalite/data/ver"
+ (lambda () (display #$version))))))))
+ (native-inputs
+ (list python-setuptools))
(home-page "https://github.com/nhoffman/fastalite";)
(synopsis "Simplest possible FASTA parser")
(description "This library implements a FASTA and a FASTQ parser without
