guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 6b6a3c6cbac3ad9c640ad9de415cf1581ce31164
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Thu Oct 30 11:04:39 2025 +0000
gnu: bwa-meth: Update to 0.2.9.
* gnu/packages/bioinformatics.scm (bwa-meth): Update to 0.2.9.
[build-system]: Switch to pyproject-build-system.
[arguments] <tests?>: No tests.
[inputs]: Add python-toolshed.
[native-inputs]: Remove python-toolshed; add python-setuptools.
Change-Id: Ib3544054943af904f4acea0a899f86ef66e7a47d
---
gnu/packages/bioinformatics.scm | 16 +++++++++-------
1 file changed, 9 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 3f341ec3c3..9b9d2449cb 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5791,7 +5791,7 @@ well as many of the command line options.")
(define-public bwa-meth
(package
(name "bwa-meth")
- (version "0.2.3")
+ (version "0.2.9")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -5800,10 +5800,11 @@ well as many of the command line options.")
(file-name (git-file-name name version))
(sha256
(base32
- "0c695lkrr0996zwkibl7324wg2vxmn6522sz30xv4a9gaf0lnbh3"))))
- (build-system python-build-system)
+ "0192h6rdaxa1rx16hgkanwsp3qv9knsmnghy07ya1231qia8h67p"))))
+ (build-system pyproject-build-system)
(arguments
- `(#:phases
+ `(#:tests? #f ;no tests
+ #:phases
(modify-phases %standard-phases
(add-after 'unpack 'keep-references-to-bwa
(lambda* (#:key inputs #:allow-other-keys)
@@ -5812,10 +5813,11 @@ well as many of the command line options.")
(string-append (which "bwa") " " command))
;; There's an ill-advised check for "samtools" on PATH.
(("^checkX.*") "")))))))
- (inputs
- (list bwa))
(native-inputs
- (list python-toolshed))
+ (list python-setuptools))
+ (inputs
+ (list bwa
+ python-toolshed))
(home-page "https://github.com/brentp/bwa-meth";)
(synopsis "Fast and accurante alignment of BS-Seq reads")
(description
