guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 20839470f3b75cef02f410df804bfe9e2808d7e3
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Tue Oct 14 21:44:40 2025 +0100
gnu: python-reproject: Improve package.
* gnu/packages/astronomy.scm (python-reproject): Update to 0.14.1.
[arguments] <test-flags>: Limit to 8 threads to relax load on host
machine running them.
<phases>: Remove 'create-setup.py, writable-compiler,
'prepare-test-environment; use custom 'check.
[inputs]: Add python-asdf, python-gwcs, python-pyvo, python-shapely, and
python-sunpy-minimal.
[propagated-inputs]: Remove python-asdf, python-gwcs, python-pyvo, and
python-shapely.
[native-inputs]: Remove python-cython-3, python-asdf, python-gwcs,
python-pyvo, and python-wheel; add python-cython.
Change-Id: Ie4d47ff47c120dca4ac1ab609e7bf142a9f181a0
---
gnu/packages/astronomy.scm | 72 +++++++++++++++++++---------------------------
1 file changed, 29 insertions(+), 43 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 46c93f153f..c7fc7a4709 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -7372,7 +7372,7 @@ PSF} describing how the optical system spreads light from
sources.")
(define-public python-reproject
(package
(name "python-reproject")
- (version "0.14.1")
+ (version "0.14.1") ;XXX: Newer versions need to be build with NumPy 2+
(source
(origin
(method url-fetch)
@@ -7382,64 +7382,50 @@ PSF} describing how the optical system spreads light
from sources.")
(build-system pyproject-build-system)
(arguments
(list
+ ;; tests: 2062 passed, 398 skipped, 3 warnings
#:test-flags
#~(list "--arraydiff"
"--arraydiff-default-format=fits"
- "--numprocesses" (number->string (parallel-job-count))
- "--pyargs" "reproject")
+ "--numprocesses" (number->string (min 8 (parallel-job-count)))
+ "--pyargs" "reproject"
+ ;; ValueError: Could not determine celestial frame corresponding
+ ;; to the specified WCS object
+ "-k" "not test_solar_wcs")
#:phases
#~(modify-phases %standard-phases
- ;; setup.py was removed in a659a260bdd7635cddc8f33c4ea04a3b6d8c1f84
- ;; for some unknown reason, which caused the package to fail to
- ;; build. It is being recreated based on that commit.
- ;; TODO: Check how to implement it in python-build-system.
- (add-after 'unpack 'create-setup.py
- (lambda _
- (call-with-output-file "setup.py"
- (lambda (port)
- (format port "from setuptools import setup
-from extension_helpers import get_extensions
-setup(ext_modules=get_extensions())")))))
- (add-before 'install 'writable-compiler
- (lambda _
- (make-file-writable "reproject/_compiler.c")))
- (add-before 'check 'writable-compiler
- (lambda _
- (make-file-writable "reproject/_compiler.c")))
- (add-before 'check 'prepare-test-environment
- (lambda _
- (setenv "HOME" "/tmp")
- ;; Cython extensions have to be built before running the tests.
- (invoke "python" "setup.py" "build_ext" "--inplace"))))))
- (propagated-inputs
+ ;; Use built library for tests.
+ (replace 'check
+ (lambda* (#:key tests? test-flags #:allow-other-keys)
+ (when tests?
+ (with-directory-excursion #$output
+ (setenv "HOME" "/tmp")
+ (apply invoke "pytest" "-vv" test-flags))))))))
+ (native-inputs
+ (list python-cython
+ python-extension-helpers
+ python-pytest-astropy
+ python-pytest-xdist
+ python-setuptools-scm))
+ (inputs
(list python-asdf
- python-astropy
+ python-gwcs
+ python-pyvo
+ python-shapely
+ python-sunpy-minimal))
+ (propagated-inputs
+ (list python-astropy
python-astropy-healpix
python-cloudpickle
python-dask
python-fsspec
- python-gwcs
python-numpy
- python-pyvo
python-scipy
- python-shapely
python-zarr))
- (native-inputs
- (list python-cython
- python-extension-helpers
- python-asdf
- python-gwcs
- python-pytest-astropy
- python-pytest-xdist
- python-pyvo
- ;; python-sunpy ; circular dependencies, test optional
- python-setuptools-scm
- python-wheel))
(home-page "https://reproject.readthedocs.io";)
(synopsis "Astronomical image reprojection in Python")
(description
- "This package provides a functionality to reproject astronomical images
using
-various techniques via a uniform interface, where reprojection is the
+ "This package provides a functionality to reproject astronomical images
+using various techniques via a uniform interface, where reprojection is the
re-gridding of images from one world coordinate system to another e.g.
changing the pixel resolution, orientation, coordinate system.")
(license license:bsd-3)))
