guix_mirror_bot pushed a commit to branch r-team
in repository guix.
commit 34095f3ff9e58fb43e63b2dd586cc2a7025e464e
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Tue Nov 25 13:48:17 2025 +0100
gnu: r-txdbmaker: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-txdbmaker): Update to 1.6.0.
[propagated-inputs]: Add r-seqinfo.
[native-inputs]: Add r-genomeinfodbdata.
Change-Id: If4a6489cd6b23429d7351dd7e2c3687b757a174c
---
gnu/packages/bioconductor.scm | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c126f003e2..d37504c931 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -14921,13 +14921,13 @@ dependencies between GO terms can be implemented and
applied.")
(define-public r-txdbmaker
(package
(name "r-txdbmaker")
- (version "1.4.1")
+ (version "1.6.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "txdbmaker" version))
(sha256
- (base32 "0yfdm8v371mr76mxwbs8gc8bxnh5l9hpsrm9n7j2z1ipz4rn8scj"))))
+ (base32 "0rczknnbccc2vlbs0mkv89fqmr1myxjba12dvvyqfpnh7pcxfihp"))))
(properties
'((upstream-name . "txdbmaker")
(updater-extra-native-inputs . ("r-runit"))))
@@ -14957,8 +14957,9 @@ dependencies between GO terms can be implemented and
applied.")
r-rsqlite
r-rtracklayer
r-s4vectors
+ r-seqinfo
r-ucsc-utils))
- (native-inputs (list r-knitr r-runit))
+ (native-inputs (list r-genomeinfodbdata r-knitr r-runit))
(home-page "https://bioconductor.org/packages/txdbmaker";)
(synopsis "Tools for making TxDb objects from genomic annotations")
(description
