guix_mirror_bot pushed a commit to branch r-team
in repository guix.
commit d55259ad80170e64d2697c6c63403da9d9d83d40
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Tue Nov 25 13:49:48 2025 +0100
gnu: r-plyranges: Update to 1.30.1.
* gnu/packages/bioconductor.scm (r-plyranges): Update to 1.30.1.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.
Change-Id: Ic24230a108cb066b84353061d0f8e41f206dd95e
---
gnu/packages/bioconductor.scm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index fd23cc1b2f..da4afbd5b9 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -16838,13 +16838,13 @@ genes or proteins in these datasets.")
(define-public r-plyranges
(package
(name "r-plyranges")
- (version "1.28.0")
+ (version "1.30.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "plyranges" version))
(sha256
(base32
- "08iif4rllnshp3xzsk8y08c3jnpk2k4bbnf6f7rsx2q4sgvnlcpn"))))
+ "1s2r33jisiqcfk7avn8hhk281nbm4skq3956di3d6xv4n3qxfcy8"))))
(properties
'((upstream-name . "plyranges")
(updater-extra-native-inputs . ("r-helloranges"))))
@@ -16868,7 +16868,6 @@ genes or proteins in these datasets.")
(string-append m "skip('guix')\n"))))))))
(propagated-inputs (list r-biocgenerics
r-dplyr
- r-genomeinfodb
r-genomicalignments
r-genomicranges
r-iranges
@@ -16877,6 +16876,7 @@ genes or proteins in these datasets.")
r-rsamtools
r-rtracklayer
r-s4vectors
+ r-seqinfo
r-tidyselect))
(native-inputs (list r-bsgenome-hsapiens-ucsc-hg19 r-helloranges r-knitr
r-testthat))
