guix_mirror_bot pushed a commit to branch r-team
in repository guix.
commit feadbc7b6c1066979acbd0cde9e6d44bcca14479
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Tue Nov 25 22:31:35 2025 +0100
gnu: r-msigdbr: Enable tests.
The CRAN tarball appears to have been replaced in place shortly after the
initial upload.
* gnu/packages/cran.scm (r-msigdbr)[source]: Update hash.
[arguments]: Remove phase 'disable-bad-tests.
Change-Id: Iff1678e3802178ff344fc7efdee20f897df08f03
---
gnu/packages/cran.scm | 21 +--------------------
1 file changed, 1 insertion(+), 20 deletions(-)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index d4f4714200..50deb6ba28 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -37560,27 +37560,8 @@ compiled by the HGNC Comparison of Orthology
Predictions (HCOP).")
(uri (cran-uri "msigdbr" version))
(sha256
(base32
- "00nhzpkxhkbn01v1xwngqxrlcg37f3m7xlkd3b88lsr2l2fr5596"))))
+ "19m3588nw8nl1d5v2394i79hfrghcaylblqvbrfg5w9dfiw5pxbz"))))
(build-system r-build-system)
- (arguments
- (list
- #:phases
- '(modify-phases %standard-phases
- (add-after 'unpack 'disable-bad-tests
- (lambda _
- ;; These tests attempt to download a data file.
- (substitute* "tests/testthat/test-msigdbr-collections.R"
- ((".*msigdbr_collections\\(\\).*" m)
- (string-append m "skip('skip');\n")))
- (substitute* "tests/testthat/test-msigdbr.R"
- ((".*collections and subcollections.*" m)
- (string-append m "skip('skip');\n"))
- ((".*msigdbr\\(\\) subcollection partial match.*" m)
- (string-append m "skip('skip');\n"))
- ((".*deprecated parameters.*" m)
- (string-append m "skip('skip');\n"))
- ((".*species.*" m)
- (string-append m "skip('skip');\n"))))))))
(propagated-inputs
(list r-assertthat
r-babelgene
