guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit 9e91904f9a5c7468bc1f093db51491aca36b621f
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Fri Dec 12 16:06:49 2025 +0000
gnu: python-scikit-image: Update to 0.25.2.
* gnu/packages/python-science.scm (python-scikit-image): Update to 0.25.2.
[arguments] <test-flags>: Ignore benchmark tests.
<phases>: Remove 'change-home-dir, 'pre-check, 'post-check; add
'remove-local-source.
[propagated-inputs]: Remove python-cloudpickle, python-dask,
python-matplotlib, python-pythran, and python-pywavelets; add
python-packaging.
[native-inputs]: Remove python-numpydoc, python-packaging, and
python-wheel; add python-pythran.
Change-Id: Ifbfbb3e2d28dc8784f600a4cd1a0f0c7129fddb5
---
gnu/packages/python-science.scm | 58 ++++++++++++++++-------------------------
1 file changed, 23 insertions(+), 35 deletions(-)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index df8d83c9b3..7641d2c86d 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -2865,7 +2865,7 @@ logic, also known as grey logic.")
(define-public python-scikit-image
(package
(name "python-scikit-image")
- (version "0.23.2")
+ (version "0.25.2")
(source
(origin
(method git-fetch)
@@ -2874,61 +2874,49 @@ logic, also known as grey logic.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "1bc8i57sjk44vd9k1ilr6fpvfq1zbq9yfi22lz22k26mzrlisym3"))))
+ (base32 "1cr3ki47z9g8kylnff1nrmv5fr3lrgmibl41q0v98pldghnslxdv"))))
(build-system pyproject-build-system)
(arguments
(list
+ ;; tests: 8271 passed, 160 skipped, 1 deselected, 89 xfailed
#:test-flags
- ;; To make sure we test compiled and installed module.
- #~(list (string-append #$output "/lib/python"
- #$(version-major+minor (package-version python))
- "/site-packages")
+ #~(list "--ignore=benchmarks/"
"--pyargs" "skimage"
- ;; Disable flaky test
- "-k" (string-join
- (list "not test_ellipse_parameter_stability"
- ;; ValueError: Cannot call len() on object with
unknown chunk size.
-
"test_thresholds_dask_compatibility[threshold_triangle-41-43]")
- " and not "))
+ ;; RuntimeWarning: divide by zero encountered in scalar divide
+ "-k" "not test_ellipse_parameter_stability")
#:phases
#~(modify-phases %standard-phases
- (add-before 'build 'change-home-dir
- (lambda _
- ;; Change from /homeless-shelter to /tmp for write permission.
- (setenv "HOME" "/tmp")))
- (add-before 'check 'pre-check
- (lambda _
- ;; To prevent loading tests twise.
- ;; 16277 passed, 240 skipped, 4 deselected
- (delete-file-recursively "skimage")))
- (add-before 'check 'post-check
+ (add-before 'check 'remove-local-source
(lambda _
- (for-each delete-file-recursively
- (find-files #$output "__pycache__" #:directories?
#t)))))))
- ;; See requirements/ for the list of build and run time requirements.
+ (delete-file-recursively "skimage"))))))
+ ;; See pyproject.toml for the list of build and run time requirements.
;; NOTE: scikit-image has an optional dependency on python-pooch, however
;; propagating it would enable many more tests that require online data.
(propagated-inputs
- (list python-cloudpickle
- python-dask
- python-imageio
+ (list python-imageio
python-lazy-loader
- python-matplotlib
python-networkx
python-numpy
+ python-packaging
python-pillow
- python-pythran
- python-pywavelets
python-scipy
- python-tifffile))
+ python-tifffile
+ ;; [optional]
+ ;; python-astropy
+ ;; python-cloudpickle
+ ;; python-dask
+ ;; python-matplotlib
+ ;; python-pooch
+ ;; python-pyamg
+ ;; python-pywavelets
+ ;; python-scikit-learn
+ #;python-simpleitk))
(native-inputs
(list meson-python
python-cython
- python-numpydoc
- python-packaging
python-pytest
python-pytest-localserver
- python-wheel))
+ python-pythran))
(home-page "https://scikit-image.org/";)
(synopsis "Image processing in Python")
(description
