guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit a4f8eea6d8b91c80433b8681aac7216bfbd6b7e8
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Sun Dec 14 14:54:29 2025 +0000
gnu: python-h5py: Update to 3.15.1.
* gnu/packages/python-xyz.scm (python-h5py): Update to 3.15.1.
[arguments] <test-flags>: Skip test recruiting the build with MPI
support.
<phases>: Remove 'relax-gcc-14-strictness; do not delete/implement custom
'check, use default.
[propagated-inputs]: Remove python-six.
[native-inputs]: Remove python-ipython, python-pytest-mpi, and
python-wheel.
Change-Id: Iee3bdaa9f3950404791e770ee600da1650842496
---
gnu/packages/python-xyz.scm | 40 ++++++++++++++++++----------------------
1 file changed, 18 insertions(+), 22 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index b722fadda5..f35d6827ff 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -4998,48 +4998,44 @@ library.")
(define-public python-h5py
(package
(name "python-h5py")
- (version "3.13.0")
+ (version "3.15.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "h5py" version))
(sha256
- (base32 "1hq5f5mnkv2138xsq7k7qncf6b7zc0cmm2fhhpd2603j31jy8w0q"))))
+ (base32 "0sbbw9100f2763czngbpg1jxisp5r5pkpa2swm6mcws4bka3wvn8"))))
(build-system pyproject-build-system)
(arguments
(list
+ ;; tests: 800 passed, 18 skipped, 4 deselected, 12 warnings
+ #:test-flags
+ ;; Tests requiring the build with MPI.
+ #~(list "-k" (string-append "not test_mpio"
+ " and not test_mpio_append"
+ " and not test_mpi_atomic"
+ " and not test_close_multiple_mpio_driver"))
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'fix-hdf5-paths
(lambda _
(setenv "HDF5_DIR" #$(this-package-input "hdf5"))))
- ;; The tests only work after being installed.
- (delete 'check)
- (add-after 'install 'check
- (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+ (replace 'check
+ (lambda* (#:key tests? test-flags #:allow-other-keys)
(when tests?
(setenv "H5PY_TEST_CHECK_FILTERS" "1")
- (with-directory-excursion (site-packages inputs outputs)
- (invoke "pytest" "-vv")))))
- (add-before 'build 'relax-gcc-14-strictness
- (lambda _
- (setenv
- "CFLAGS"
- (string-append
- "-g -O2"
- `" -Wno-error=incompatible-pointer-types")))))))
- (propagated-inputs (list python-six python-numpy))
- (inputs (list hdf5))
+ (with-directory-excursion #$output
+ (apply invoke "pytest" "-vv" test-flags))))))))
(native-inputs
(list pkg-config
python-cython
- python-ipython
python-pkgconfig
python-pytest
- ;; Required to run tests, but the MPI tests are skipped anyway.
- python-pytest-mpi
- python-setuptools
- python-wheel))
+ python-setuptools))
+ (inputs
+ (list hdf5))
+ (propagated-inputs
+ (list python-numpy))
(home-page "https://www.h5py.org/";)
(synopsis "Read and write HDF5 files from Python")
(description
