guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit 19b9a776175bf51e18686e557b08ca7cdf226be2
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Sun Dec 14 10:55:35 2025 +0000
gnu: python-dask-image: Update to 2025.11.0.
* gnu/packages/python-science.scm (python-dask-image): Update to 2025.11.0.
[arguments] <test-flags>: All tests passed.
<phases>: Add 'fix-pytest-config; rework 'set-version to read from envar.
[propagated-inputs]: Remove python-tifffile-for-dask-image; add
python-tifffile.
[native-inputs]: Remove python-setuptools-scm; add
python-setuptools-scm-next.
* gnu/packages/python-xyz.scm (python-tifffile-for-dask-image): Delete
variable.
Change-Id: I928c39c848f3a20d5eb51d10e4c8374891b8f0b0
---
gnu/packages/python-science.scm | 31 ++++++++++---------------------
gnu/packages/python-xyz.scm | 14 --------------
2 files changed, 10 insertions(+), 35 deletions(-)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 18ae6157d0..e016684f81 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -854,49 +854,38 @@ optimization and generally improved organization.")
(define-public python-dask-image
(package
(name "python-dask-image")
- (version "2024.5.3")
+ (version "2025.11.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "dask_image" version))
(sha256
- (base32 "0g4293n1vjlpyxbvd1xz3pz9an9z4rnsw1m7lynhm00m0bgiz7qc"))))
+ (base32 "1cx07dh09yqq6swyziiy9mb2f27ywja18gylfly1874a7af1mks5"))))
(build-system pyproject-build-system)
(arguments
(list
- ;; tests: 2152 passed, 177 skipped, 6 deselected, 4037 warnings
- #:test-flags
- #~(list "-k" (string-join
- ;; KeyError: 'float32
- (list "not test_spline_filter_output_dtype[None-float32_1]"
- "test_spline_filter_output_dtype[-1-float32_1]"
- ;; AttributeError: 'str' object has no attribute
- ;; 'start'
- "test_find_objects"
- "test_3d_find_objects"
- ;; assert False
- "test_find_objects_with_empty_chunks")
- " and not "))
+ ;; tests: 2171 passed, 177 skipped, 3405 warnings
#:phases
#~(modify-phases %standard-phases
- (add-before 'build 'set-version
+ (add-after 'unpack 'fix-pytest-config
(lambda _
(substitute* "pyproject.toml"
- (("^version_file.*") "")
- (("dynamic = \\[\"version\"\\]")
- (string-append "version = \"" #$version "\""))))))))
+ (("--flake8") ""))))
+ (add-before 'build 'set-version
+ (lambda _
+ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version))))))
(native-inputs
(list python-pytest
python-pytest-timeout
python-setuptools
- python-setuptools-scm))
+ python-setuptools-scm-next))
(propagated-inputs
(list python-dask
python-numpy
python-pandas
python-pims
python-scipy
- python-tifffile-for-dask-image))
+ python-tifffile))
(home-page "https://github.com/dask/dask-image";)
(synopsis "Distributed image processing")
(description "This is a package for image processing with Dask arrays.
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index deb59658f0..b4111d2521 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -37913,20 +37913,6 @@ MicroManager, MD GEL, and FluoView files. It also
lets you write numpy arrays
to TIFF, BigTIFF, and ImageJ hyperstack compatible files.")
(license license:bsd-3)))
-(define-public python-tifffile-for-dask-image
- ;; It's for [email protected], remove when no longer required.
- (hidden-package
- (package
- (inherit python-tifffile)
- (name "python-tifffile")
- (version "2023.12.9")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "tifffile" version))
- (sha256
- (base32 "1f6d8qdlq0zlksfdhp1mhj9icpwhw4cz47r4i80m6r0a328xmlcx")))))))
-
(define-public python-tiktoken
(package
(name "python-tiktoken")
