guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit f585edcc5c47ae8b6734ef9da46f68fe5c4df1c0
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Fri Jan 2 15:25:36 2026 +0000
gnu: python-pygsp: Update to 0.6.0.
* gnu/packages/graph.scm (python-pygsp): Update to 0.6.0.
[source] <pypi-uri>: Fix name.
[arguments] <test-flags>: Rework skipped tests.
<phases>: Remove 'disable-doctets.
[propagated-inputs]: Remove python-scikit-image.
[native-inputs]: Remove python-coverage, python-coveralls, and
python-flake8; add python-matplotlib, python-pyunlocbox,
python-scikit-image, and python-setuptools.
Change-Id: Ic2ef43e47967897e2d7df7e628a8d02ff7684360
---
gnu/packages/graph.scm | 39 ++++++++++++++++++---------------------
1 file changed, 18 insertions(+), 21 deletions(-)
diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index 7479bc3c43..44cc0a6751 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -437,36 +437,33 @@ algorithm for a number of different methods.")
(define-public python-pygsp
(package
(name "python-pygsp")
- (version "0.5.1")
+ (version "0.6.0")
(source
(origin
(method url-fetch)
- (uri (pypi-uri "PyGSP" version))
+ (uri (pypi-uri "pygsp" version))
(sha256
- (base32 "002q4z3p3ka81rzhgi66qqmz1ccrg9hwch4bax7jsqixg64asx28"))))
+ (base32 "0zbyka8pvcy7rmw65cpkss2k6sn420k67wcrcp8nka36l9pjadam"))))
(build-system pyproject-build-system)
(arguments
(list
+ ;; tests: 97 passed, 6 skipped, 3 deselected, 10 warnings
#:test-flags
- ;; These all fail due to a type error in scipy.
- '(list "-k" (string-append "not test_bunny"
- " and not test_lowstretchtree"
- " and not test_nngraph"
- " and not test_plot_graphs"
- " and not test_randomregular"))
- #:phases
- '(modify-phases %standard-phases
- (add-after 'unpack 'disable-doctests
- (lambda _
- (substitute* "pygsp/tests/test_all.py"
- (("def test_docstrings.*") "def _disabled_test_docstrings():\n")
- (("return doctest.DocFileSuite.*") "return False\n")
- (("suites.append\\(test_docstrings.*")
- "")))))))
- (propagated-inputs (list python-numpy python-scikit-image python-scipy))
+ ;; Not equal to tolerance rtol=1e-07, atol=1e-12
+ #~(list "--deselect=pygsp/tests/test_graphs.py::test_eigendecompositions"
+ ;; ValueError: Only p-norms with 1<=p<=infinity permitted
+ "--deselect=pygsp/tests/test_graphs.py::test_nngraph"
+ ;; This test needs pyqtgraph and PyQt6.
+
"--deselect=pygsp/tests/test_plotting.py::TestGraphs::test_all_graphs")))
(native-inputs
- (list python-coverage python-coveralls python-flake8
- python-pytest))
+ (list python-matplotlib
+ python-pytest
+ python-pyunlocbox
+ python-scikit-image
+ python-setuptools))
+ (propagated-inputs
+ (list python-numpy
+ python-scipy))
(home-page "https://github.com/epfl-lts2/pygsp";)
(synopsis "Graph Signal Processing in Python")
(description "The PyGSP is a Python package to ease signal processing on
