guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit c54d905b8f08a155b6f521f0fec691c7dc43ddf7
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Fri Jan 2 15:25:36 2026 +0000
gnu: python-magic-impute: Update to 3.0.0.
* gnu/packages/bioinformatics.scm (python-magic-impute): Update to 3.0.0.
[arguments] <tests?, test-flags>: Enable them.
[native-inputs]: Add python-pytest and python-setuptools.
[propagated-inputs]: Add python-scprep.
Change-Id: I4e1567fc6b5b32ee77f13d801042ea321f33dfa8
---
gnu/packages/bioinformatics.scm | 21 +++++++++++++--------
1 file changed, 13 insertions(+), 8 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7273ce966d..385da56adf 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3195,25 +3195,29 @@ fraction of valid symbols in that position.")
(define-public python-magic-impute
(package
(name "python-magic-impute")
- (version "1.2.1")
+ (version "3.0.0")
(source
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/KrishnaswamyLab/MAGIC";)
- (commit (string-append "v" version))))
+ (url "https://github.com/KrishnaswamyLab/MAGIC";)
+ (commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
- "1yjs16vg87lcg9g16bnblg1v9sk73j6dm229lkcz0bfjlzxjhv8w"))))
+ "1f4ckvpki2461xd5hclhj7gqwj8xizs4d0fd942kvgafidrsdvlx"))))
(build-system pyproject-build-system)
(arguments
(list
- #:tests? #false ;there are none
+ #:test-flags
+ #~(list "test/test.py")
#:phases
- '(modify-phases %standard-phases
- (add-after 'unpack 'chdir
- (lambda _ (chdir "python"))))))
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'chdir
+ (lambda _ (chdir "python"))))))
+ (native-inputs
+ (list python-pytest
+ python-setuptools))
(propagated-inputs
(list python-future
python-graphtools
@@ -3222,6 +3226,7 @@ fraction of valid symbols in that position.")
python-pandas
python-scikit-learn
python-scipy
+ python-scprep
python-tasklogger))
(home-page "https://github.com/KrishnaswamyLab/MAGIC";)
(synopsis "Markov affinity-based graph imputation of cells")
