guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit d02e26b15e06faf8b41cec46f11b62777658e546
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Fri Jan 2 21:01:18 2026 +0000
gnu: python-cnmf: Update to 1.7.0.
* gnu/packages/bioinformatics.scm (python-cnmf): Update to 1.7.0.
[arguments] <tests?, test-flags>: Enable them.
[native-inputs]: Remove python-wheel; add python-pytest.
Change-Id: I927b10045e563cc81bcb077f3af9ba3312869280
---
gnu/packages/bioinformatics.scm | 18 +++++++++++++-----
1 file changed, 13 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ebb247582a..fb57089ecf 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2619,17 +2619,25 @@ and sequence consensus.")
(define-public python-cnmf
(package
(name "python-cnmf")
- (version "1.6.0")
+ (version "1.7.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "cnmf" version))
(sha256
- (base32 "0aic8cwj6riykcfgl6v2x3si5z04gaknkh5a8lcyv1qh4s1gx3d3"))))
+ (base32 "1v2d7gsxy57rg26wjx4sz2fqk8ggkp3ds0s1g54cm8z8aac6qhxz"))))
(build-system pyproject-build-system)
(arguments
(list
- #:tests? #f ; no tests in git checkout and PyPI archive
+ ;; tests: 36 passed, 2 deselected, 19 warnings
+ #:test-flags
+ ;; XXX: Tests data is downloaded sepratly, see download_pytest_data.py.
+ #~(list #$@(map (lambda (test) (string-append "--deselect="
+ "tests/"
+ "test_reproducibility.py::"
+ test))
+ (list"test_cnmf_end_to_end[dataset_config0]"
+ "test_cnmf_end_to_end[dataset_config1]")))
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'set-envs
@@ -2638,8 +2646,8 @@ and sequence consensus.")
;; Numba needs a writable dir to cache functions.
(setenv "NUMBA_CACHE_DIR" "/tmp"))))))
(native-inputs
- (list python-setuptools
- python-wheel))
+ (list python-pytest
+ python-setuptools))
(propagated-inputs
(list python-anndata
python-fastcluster
