guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit c02124de7695ff2432057d84400005223aed5bf5
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Sat Jan 3 01:45:35 2026 +0000
gnu: python-deeptools: Update to 3.5.6.
* gnu/packages/bioinformatics.scm (python-deeptools): Update to 3.5.6.
[arguments] <test-flags>: Skip one test.
<phases>: Remove 'fix-test.
[native-inputs]: Remove python-wheel.
Change-Id: I233b272ee06ab6c290c11a6875961de0fe52b8e8
---
gnu/packages/bioinformatics.scm | 26 ++++++++++----------------
1 file changed, 10 insertions(+), 16 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ef4847cc31..0daa0acb16 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6562,7 +6562,7 @@ interval trees with associated meta-data. It is
primarily used by the
(define-public python-deeptools
(package
(name "python-deeptools")
- (version "3.5.5")
+ (version "3.5.6")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -6571,25 +6571,19 @@ interval trees with associated meta-data. It is
primarily used by the
(file-name (git-file-name name version))
(sha256
(base32
- "0mgcs03amrd5157drbm6ikdg0m0szrn9xbflariz2zrrnqpsai6s"))))
+ "0npdcqlbcxwzkadz9j6yqzk7snl6758gn3lnff9845x3ycxfa5bp"))))
(build-system pyproject-build-system)
(arguments
(list
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'unpack 'fix-test
- (lambda _
- (substitute* "deeptools/test/test_tools.py"
- (("e_ver = _p")
- "e_ver = \".\" + _p + \"-real\""))
- (substitute* "deeptools/multiBigwigSummary.py"
- (("version='multiBigwigSummary")
- "version='%(prog)s"))
- (substitute* "deeptools/plotCoverage.py"
- (("version='plotCoverage")
- "version='%(prog)s")))))))
+ ;; tests: 99 passed, 1 deselected
+ #:test-flags
+ ;; AssertionError: assert '.alignmentSieve-real 3.5.6' ==
+ ;; 'alignmentSieve 3.5.6'
+ #~(list "--deselect=deeptools/test/test_tools.py::test_tools")))
(native-inputs
- (list python-mock python-pytest python-setuptools python-wheel))
+ (list python-mock
+ python-pytest
+ python-setuptools))
(propagated-inputs
(list python-matplotlib
python-numpy
