guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit f7cd51eda20d577e1ce24efe78c40042ccdbc186
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Fri Jan 2 23:56:39 2026 +0000
gnu: python-pomegranate: Update to 1.1.0.
* gnu/packages/python-xyz.scm (python-pomegranate): Update to 1.1.0.
[source]: Switch to git-fetch providing tests.
[arguments] <tests?, test-flags>: Enable them.
[propagated-inputs]: Remove python-joblib and python-pyyaml; add
python-apricot-select, python-scikit-learn, and python-pytorch.
[native-inputs]: Remove python-pandas and python-wheel; add
python-pytest.
Change-Id: Idf53aff2124c98fd7dc1172a31028a57347d2a4b
---
gnu/packages/python-xyz.scm | 75 +++++++++++++++++++++++++++++++--------------
1 file changed, 52 insertions(+), 23 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 5fc24ced6e..e2ccab2bd8 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -7413,34 +7413,63 @@ a certain expected condition.")
(define-public python-pomegranate
(package
(name "python-pomegranate")
- (version "0.14.8")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "pomegranate" version))
- (sha256
- (base32
- "0gb9srkbxzlkjyfizvxkw5y0bvnfcyiaxapz0hrdaba8j096b5i2"))
- (modules '((guix build utils)))
- ;; Delete generated Cython C files.
- (snippet
- '(for-each delete-file (find-files "." "\\.c$")))))
+ (version "1.1.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/jmschrei/pomegranate";)
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0arx5wik4ywna7k7g5y3ggwz98fl1hgap0278pph3c77ap8afqd7"))))
(build-system pyproject-build-system)
(arguments
(list
- ;; XXX: Update to [email protected] broke some python-nose functionality.
- ;; Tests are broken but the package itself is most likely fine.
- #:tests? #f))
- (propagated-inputs
- (list python-joblib
- python-networkx
- python-numpy
- python-pyyaml
- python-scipy))
+ ;; tests: 830 passed, 19 deselected, 529 warnings
+ #:test-flags
+ #~(list #$@(map (lambda (test) (string-append "--deselect="
+ "tests/distributions/"
+ test))
+ ;; _pickle.UnpicklingError: Weights only load failed.
+ (list "test_bernoulli.py::test_serialization"
+ "test_categorical.py::test_serialization"
+ "test_exponential.py::test_serialization"
+ "test_gamma.py::test_serialization"
+ "test_independent_component.py::test_serialization"
+ "test_normal_diagonal.py::test_serialization"
+ "test_normal_full.py::test_serialization"
+ "test_poisson.py::test_serialization"
+ "test_student_t.py::test_serialization"
+ "test_uniform.py::test_serialization"
+ ;; Arrays are not almost equal to 3 decimals
+ "test_categorical.py::test_sample"
+ "test_independent_component.py::test_sample"
+ "test_joint_categorical.py::test_sample"
+ "test_joint_categorical.py::test_sample"))
+ #$@(map (lambda (test) (string-append "--deselect="
+ "tests/"
+ test))
+ ;; _pickle.UnpicklingError: Weights only load failed.
+ (list "test_bayes_classifier.py::test_serialization"
+ "test_gmm.py::test_serialization"
+ "test_kmeans.py::test_serialization"
+ ;; Arrays are not almost equal to 3 decimals
+ "test_bayesian_network.py::test_sample"
+ "test_gmm.py::test_sample"
+ "test_markov_chain.py::test_sample"
+ "test_markov_chain.py::test_sample")))))
(native-inputs
(list python-cython
- python-pandas
- python-setuptools
- python-wheel))
+ python-pytest
+ python-setuptools))
+ (propagated-inputs
+ (list python-apricot-select
+ python-networkx
+ python-numpy
+ python-scikit-learn
+ python-scipy
+ python-pytorch))
(home-page "https://pypi.python.org/pypi/pomegranate/";)
(synopsis "Graphical models library for Python")
(description
