On Thu, Jul 09, 2009 at 10:17:57AM +0200, Nicolas Delorme wrote:
> 1) Is there a way to obtain a 2D-PSD with Gwyddion? If not it will be 
> great since it's often more usefull (pores size...) than the 1D-PSD or 
> even the radial PSD.

You can obtain 2D PSDF modulus by Data Process → Integral Transforms →
2D FFT and choosing Modulus as the output type.  PSDF is the square of
that (PSDF is not directly produced, the modulus seems better for
visualization).

More precisely, the PSDF is proportional to the square; the 2D FFT units
are always sort of arbitrary, see the parallel discussion about PSD
normalization...

> 2) I have an Agilent AFM, some months ago the file format was /.spm /and 
> Gwyddion was able to open these files now they change their file format 
> to /.mi/ and I cannot open these files with Gwyddion.

Gwyddion can open .mi files, at least some older files I have available.
Perhaps the format has changed.

> Could you solve this problem. If needed I can provide you .mi files.

That's always a good start because there's not much to tell without
seeing the files.  If you send them by e-mail, please send them
compressed, do not send giant scans and send them directly to my
university address [email protected].

Best regards,

Yeti


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