Thank you Yeti. That's a bummer. So if I'm understanding this correctly, Affine 
is only suitable for surface with regular patterns. And for my case with 
irregular pattern, I cannot use this data processing technique, whether if it 
is based on a single image or two subsequent images. Right?

Shi

Sent from my iPhone

> On Jun 29, 2016, at 11:06 AM, David Nečas (Yeti) <[email protected]> wrote:
> 
>> On Wed, Jun 29, 2016 at 01:48:52PM +0000, Shi Choong wrote:
>> I have some AFM images and I am suspecting some form of distortion,
>> most likely skew. I know there is a Affine function to correct such
>> distortion but my images have irregular pattern and I do not know what
>> could I do to correct this distortion. I have collected two images
>> (continuously scanned) of the same area, if this info is helpful.
> 
> The drift correction based on correlation of points in subsequent
> scans is not yet available in Gwyddion, sorry.  A third-party module was
> implemented AFAIK by people at University of Kiel, but I do not know if
> it is publicly available – it does not seem so.
> 
> Regards,
> 
> Yeti
> 
> 
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