I don't know, but this might be helpful until Matt/Tim can answer: http://www.nitrc.org/projects/cifti/
On Sep 10, 2014, at 1:59 AM, K. Wagstyl <kw...@cam.ac.uk> wrote: > Thanks Matt - the matlab scripts are working great. > Can I check the structure for grayordinate data? > > Is it the first 32492 vertices are left hemisphere surface, > then left subcortical, > then the next 32492 are right hemisphere surface, > then right subcortical? > > Cheers, > Konrad > > On 2014-09-09 20:48, Glasser, Matthew wrote: >> I¹d recommend option ii. >> >> You can use the surfaces and label data in the >> ${StudyFolder}/${SubjectID}/MNINonLinear/fsaverage_LR32k folder >> together >> with the dense timeseries data. To load the data into matlab, you can >> use >> these attached matlab functions together with wb_command and the matlab >> GIFTI toolbox: >> >> cii = ciftiopen(Œpath/to/file¹,¹path/to/wb_command¹); >> >> CIFTIdata = cii.cdata; >> >> >> Some lines of analysis code >> >> newcii = cii; >> >> newcii.cdata = AnalysisOutput; >> >> ciftisave(newcii,¹path/to/newfile¹,¹path/to/wb_command¹); >> >> Or if the data matrix is a different size from what you started with >> >> ciftisavereset(newcii,¹path/to/newfile¹,¹path/to/wb_command¹); >> >> And then you can view your result in Connectome Workbench¹s wb_view on >> the >> 32k standard surfaces. >> >> Peace, >> >> Matt. >> >> On 9/9/14, 10:22 AM, "K. Wagstyl" <kw...@cam.ac.uk> wrote: >> >>> Hi, >>> >>> I'm trying to carry out some analysis on the preprocessed >>> resting-state >>> fMRI but running into some problems with the *.dtseries.nii files. >>> The first part of the analysis was carried out on structural data in >>> freesurfer and matlab (using labels etc) >>> Is there any way of converting the resting-state data into a format >>> for >>> similar analysis? >>> >>> In other words, either >>> i) mapping the time series to individuals' freesurfer-space vertices >>> or >>> ii) importing the grayordinate data into matlab? >>> >>> Thanks, >>> Konrad >>> _______________________________________________ >>> HCP-Users mailing list >>> HCP-Users@humanconnectome.org >>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> >> >> ________________________________ >> The materials in this message are private and may contain Protected >> Healthcare Information or other information of a sensitive nature. If >> you are not the intended recipient, be advised that any unauthorized >> use, disclosure, copying or the taking of any action in reliance on >> the contents of this information is strictly prohibited. If you have >> received this email in error, please immediately notify the sender via >> telephone or return mail. > > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users