Hi all, Sorry to hassle, but I haven’t had any answers for this yet – anyone have any ideas? Stam: maybe I should post this to the FSL list?
Cheers, M@ On 25/3/15 9:19 , "Matthew George Liptrot" <[email protected]<mailto:[email protected]>> wrote: Hi, I am trying to create some scripts to do tractography on the HCP data (and then apply them to my own data which has been processed via the Minimal HCP Pipelines). I have been looking at the in-progress scripts in the separate DiffusionTractography branch on GitHub for help, and in the RunMatrix1.sh script there is the following section: #Do Tractography … #Merge Results from invidual Runs (~7 hours, 20 GB RAM) ptx_merged_id=`${FSLDIR}/bin/fsl_sub -T 720 -R 30000 -j ${ptx_id} -l ${ResultsFolder}/Mat1_logs -N Mat1_merge ${bindir}/fdt_matrix_merge ${ResultsFolder}/Mat1_list.txt ${ResultsFolder}/merged_matrix1.dot` Further up are pointers to an fsldev distribution from where both fdt_matrix_merge and probtrackx2 are called. The fdt_matrix_merge command isn’t included in FSL 5.0.8. Will it be released soon? I guess probtrackx also needs to be the development version? Or maybe there are alternatives using wb_command? If it helps, I am trying to generate Matrix3 (surface vertex to surface vertex, using streamlines seeded from all WM voxels). Thanks in advance, M@ -- Matthew George Liptrot <http://about.me/matthewliptrot> Department of Computer Science University of Copenhagen & Section for Cognitive Systems Department of Applied Mathematics and Computer Science Technical University of Denmark http://about.me/matthewliptrot <http://about.me/matthewliptrot> -- Matthew George Liptrot <http://about.me/matthewliptrot> Department of Computer Science University of Copenhagen & Section for Cognitive Systems Department of Applied Mathematics and Computer Science Technical University of Denmark http://about.me/matthewliptrot <http://about.me/matthewliptrot> _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
