Dear Sir, If possible could you please provide me some additional documentation on how to use efficiently use pre-processing pipelines, I have worked previously with SPM, HCP-Workbench is new for me, I have completed working on initial tutorials and started establishing DTI clinical data that we acquired at Hospital on Workbench, and i am facing several problems most of which might be very basic for you but for me ,i am currently stuck at this point, I want to study structural connectivity between vestibular system and M5 and i would like to use Workbench for my structural connectivity analysis . Currently i am doing initial preprocessing with the given pipelines .
Thanks Vasudev On 9 February 2016 at 01:32, Timothy Coalson <tsc...@mst.edu> wrote: > That looks like the same kind of error - an unset variable that is > supposed to point to the location of the pipeline scripts. > > Tim > > > On Mon, Feb 8, 2016 at 5:52 PM, Dev vasu < > vasudevamurthy.devulapa...@gmail.com> wrote: > >> Dear Professor : >> >> I have resolved this issue on my own, but i still couldn't perform >> pre-processing of DTI data , This time i am incurring following error : >> >> >> *"Mo 8. Feb 22:40:00 CET 2016 - DiffPreprocPipeline.sh - Invoking >> Pre-Eddy >> Steps/home/vasudev/Documents/workbench/HCPPIPEDIR/DiffusionPreprocessing/DiffPreprocPipeline_PreEddy.sh: >> line 69: /global/scripts/log.shlib: No such file or directory "* >> >> >> Could you please let me know if there is any documentation for DTI >> Preprocessing . >> >> >> Thanks >> Vasudev >> >> On 8 February 2016 at 23:37, Glasser, Matthew <glass...@wustl.edu> wrote: >> >>> That looks like you don’t have the pipelines environment script properly >>> set up (empty/global/…). Have another look at the set up instructions. >>> >>> Peace, >>> >>> Matt. >>> >>> From: <hcp-users-boun...@humanconnectome.org> on behalf of Dev vasu < >>> vasudevamurthy.devulapa...@gmail.com> >>> Date: Monday, February 8, 2016 at 10:55 AM >>> To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> >>> Subject: [HCP-Users] HCP Pipelines :DiffusionPreprocessing >>> >>> Dear Professor, >>> >>> I would like to use DiffusionPreprocessing Pipeline for my DTI >>> structural connectivity analysis, I have completed the tutorial on how to >>> use HCP Pipelines for Preprocessing, I have followed the instruction and i >>> have provided the path to study folder and subject, when i run the >>> DiffusionPreprocessing.sh, i am incurring following error >>> >>> >>> *"./DiffPreprocPipeline.sh: line 96: /global/scripts/log.shlib: No such >>> file or directory "* >>> >>> Although the file log.shlib is found in global directory , I am >>> incurring the same error. >>> >>> Could you please clarify me. >>> >>> >>> Thanks >>> Vasudev >>> >>> _______________________________________________ >>> HCP-Users mailing list >>> HCP-Users@humanconnectome.org >>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >>> >>> >>> ------------------------------ >>> >>> The materials in this message are private and may contain Protected >>> Healthcare Information or other information of a sensitive nature. If you >>> are not the intended recipient, be advised that any unauthorized use, >>> disclosure, copying or the taking of any action in reliance on the contents >>> of this information is strictly prohibited. If you have received this email >>> in error, please immediately notify the sender via telephone or return mail. >>> >> >> _______________________________________________ >> HCP-Users mailing list >> HCP-Users@humanconnectome.org >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> > > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
