How did you call the FreeSurfer pipeline and did you run PreFreeSurfer first?
Peace, Matt. From: wtj <1257735...@qq.com<mailto:1257735...@qq.com>> Date: Monday, March 27, 2017 at 11:30 PM To: Matt Glasser <glass...@wustl.edu<mailto:glass...@wustl.edu>> Subject: 答复: [HCP-Users] brainmask.mgz Hi， There are 69.5GB left in my studyfolder directory at present. Isn’t that enough? My freesurfer version is 5.3.0-HCP. There are 27 donors’ data. Each of them occupies about 2.5GB space, how much more space is needed before freesurfer part of pipeline? Thanks. 发件人: Glasser, Matthew [mailto:glass...@wustl.edu] 发送时间: 2017年3月27日 22:31 收件人: wtj <1257735...@qq.com<mailto:1257735...@qq.com>>; HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> 主题: Re: [HCP-Users] brainmask.mgz What version of FreeSurfer are you using and do you have enough disk space? Peace, Matt. From: <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of wtj <1257735...@qq.com<mailto:1257735...@qq.com>> Date: Monday, March 27, 2017 at 8:03 AM To: "HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org>" <HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org>> Subject: [HCP-Users] brainmask.mgz Hi, I ran the pipeline on example data well, but when I did the freesurferpipeline part on WU-Minn HCP Lifespan Pilot Data, it stopped and report an error: ERROR: failure writing /home/Tianjie/projects/WU-Minn_HCP_Lifespan_Pilot_Data_structure_preprocess/LS2009/T1w/LS2009/mri/brainmask.mgz and in *.e.7443,it reported, mghWrite(/home/Tianjie/projects/WU-Minn_HCP_Lifespan_Pilot_Data_structure_preprocess/LS2009/T1w/LS2009/mri/brainmask.mgz, -1): could not open file The detail is in attachment. I compared the output log file with one of example data, everything seems fine before something went wrong. Can you help me? Thanks. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
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