When I run DiffusionPreprocessing, I make the --dwiname=DWIName specific to
the diffusion scan (i.e. DWIName= Diffusion_dir-98_run-01) to prevent files
from being overwritten.
I end up with:
${StudyFolder}/${Subject}/T1w/Diffusion_dir-98_run-01/data.nii.gz
${StudyFolder}/${Subject}/T1w/Diffusion_dir-99_run-01/data.nii.gz
I would like to combine the two data.nii.gz files.
On Mon, Jul 17, 2017 at 10:58 AM, Glasser, Matthew <glass...@wustl.edu>
wrote:
> Look for the ${StudyFolder}/${Subject}/T1w/Diffusion/data.nii.gz file.
>
> Peace,
>
> Matt.
>
> From: <hcp-users-boun...@humanconnectome.org> on behalf of Yeun Kim <
> yeun...@gmail.com>
> Date: Monday, July 17, 2017 at 12:56 PM
> To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org>
> Subject: [HCP-Users] diffusion data merge pipeline
>
> Hi,
>
> We have the diffusion scans:
> dMRI_dir98_AP, dMRI_dir98_PA
> dMRI_dir99_AP, dMRI_dir99_PA
>
> in which there is a pair of phase encoding directions (AP,PA) and two sets
> of different diffusion weighting directions (dir98 and dir99).
>
> After running the DiffusionPreprocessing module of the HCP minimal
> preprocessing pipeline, I would like to merge the processed dMRI_dir98 and
> dMRI_dir99 data. Do you have any suggestions on how to perform this step?
> Also, are there any workflows developed by HCP for
> post-DiffusionPreprocessing?
>
> Thank you,
> Yeun
>
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