I'm assuming you want them to match a standard grayordinate space, so that they can be compared across subjects.
The simple way that doesn't account for residual subject differences in subcortical locations is to first resample the data to the appropriate resolution/orientation MNI space (222 for the 91k grayordinates), then use -cifti-create-dense-from-template with the -volume-all option. The better but more involved way is to take the subject's subcortical structure labels from freesurfer, import them to workbench format with the names that -cifti-create-label specifies, use -cifti-create-label to make a subject-specific cifti file (you will also need to provide some dummy surface data for the next step to work), and then use -cifti-resample to use only the same-structure-overlap information, and dilate to fill in any holes if desired. We use this second method for fMRI data in the pipelines, see here: https://github.com/Washington-University/Pipelines/blob/master/fMRISurface/scripts/SubcorticalProcessing.sh#L40 Though that script actually only outputs a volume file, and therefore it doesn't bother with having surface data in those temporary cifti files. Tim On Tue, Aug 8, 2017 at 3:19 PM, Xavier Guell Paradis <xavie...@mit.edu> wrote: > Dear HCP experts, > I have several subcortical nifti files, each containing one cluster. I > would like to convert them to dlabel files, so that then I can use wb_view > to see the functional connectivity from each of these clusters (using your > group .dconn file). > > How can I convert subcortical nifti files to dlabel files? > I have been exploring several wb_commands but I cannot figure it out. > > Thank you very much, > Xavier. > > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
