Thanks Matt. With the hcp_fix_multi_run script I notice that in the first few lines of code there is a line with software requirements which include FIX >= 1.065 and FSL 6.0 melodic version. I have FIX version = 1.066 and I have FSL 5.0.9 and melodic version 3.14. Without the FSL 6.0 release handy to me I am not sure what melodic version would be considered equivalent "FSL 6.0". Could you shed some light on this for me?
-Tim Timothy Hendrickson Neuroimaging Analyst/Staff Scientist University of Minnesota Informatics Institute University of Minnesota Bioinformatics M.S. Candidate Office: 612-624-0783 Mobile: 507-259-3434 (texts okay) On Thu, Jul 19, 2018 at 6:26 PM, Glasser, Matthew <glass...@wustl.edu> wrote: > There is a new Multi-run FIX pipeline currently available in the Git > repository that you can use. I would consider it beta a this time. > > Matt. > > From: <hcp-users-boun...@humanconnectome.org> on behalf of Timothy > Hendrickson <hendr...@umn.edu> > Date: Thursday, July 19, 2018 at 6:24 PM > To: "hcp-users@humanconnectome.org" <HCP-Users@humanconnectome.org> > Subject: [HCP-Users] MSMAll > > Hello, > > From the HCP course material I noticed that that suggested format to use > MSMAll is to do so immediately after the Minimal Pre-Processing stream and > immediately before subsequent tfMRI and rfMRI processing. As MSMAll expects > the data inputted to be run through ICA-FIX I am curious what I should be > doing with tfMRI data (i.e. what mods do I have to make to hcp_fix, etc). > If you could provide me a code snippet/s that would be great! > > -Tim > > Timothy Hendrickson > Neuroimaging Analyst/Staff Scientist > University of Minnesota Informatics Institute > University of Minnesota > Bioinformatics M.S. Candidate > Office: 612-624-0783 > Mobile: 507-259-3434 (texts okay) > > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
