There are a couple of things that we need to sort out to make MSMAll work with the new multi-run FIX code. We will be working on that next week.
Matt. On 10/5/18, 3:05 PM, "hcp-users-boun...@humanconnectome.org on behalf of Shankar Tumati" <hcp-users-boun...@humanconnectome.org on behalf of shankar.tum...@theroyal.ca> wrote: >Hello, > >After running the hcp_fix_multi_run.sh script on the task data, a folder >for concatenated files is created and a .ica folder is created in each >task folder. > >However, MSMAllPipeline.sh script tries to find >/filtered_func_data.ica/melodic_mix, which is present only in the Concat >folder. When the script is run on the Concat folder, the output is a >_MSMAll_hp2000_clean_vn.dtseries.nii file within a new output folder. Is >this the correct output? > >Should we use the MSMAll.sh (not MSMAllpipeline.sh) instead and then >apply DeDriftAndResamplePipeline.sh to get >_MSMAll_hp2000_clean.dtseries.nii file for each task separately? > >Thank you > >Shankar Tumati > >Mind, Brain Imaging and Neuroethics lab >University of Ottawa > >_______________________________________________ >HCP-Users mailing list >HCP-Users@humanconnectome.org >http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
