Hi, FSL/FEAT are not currently equipped to handle grayordinate data. We have examples of a “third-level” (across subject) analyses as part of the Practicals in the HCP Course. The content for the 2018 course (in June) will hopefully become available online in the near future. Until then, the material from the 2017 course is available, which covered the same basic content in this regard: https://store.humanconnectome.org/courses/2017/exploring-the-human-connectome.php (see the “tfMRI and PALM” tutorial).
Cheers, -MH -- Michael Harms, Ph.D. ----------------------------------------------------------- Associate Professor of Psychiatry Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: mha...@wustl.edu From: <hcp-users-boun...@humanconnectome.org> on behalf of "Linnman, Clas,Ph.D." <clinn...@partners.org> Date: Monday, August 20, 2018 at 11:00 AM To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: [HCP-Users] help on Simple higher level FEAT analysis Hi, I am trying to do a simple higher level FEAT analysis on some task fMRI data. I would like to correlate a variable to the motor responses. From https://wiki.humanconnectome.org/display/PublicData/Advice+for+FEAT+Analysis+of+HCP+task+fMRI+data I tried the following Higher-level Analysis FEAT GUI, choose that "Inputs are lower-level FEAT directories". Under "Select FEAT directories", for each participant in your group analysis, enter the paths to the .feat directories for the specific lower-level cope of interest (e.g., /myDATA/100307/MNINonLinear/Results/tfMRI_MOTOR/tfMRI_MOTOR_hp200_s2_level2.feat/GrayordinatesStats/cope13.feat FSL then tells me it can not find the design.fsl file in the directory But if I chose the above directory as the input (/myDATA/100307/MNINonLinear/Results/tfMRI_MOTOR/tfMRI_MOTOR_hp200_s2_level2.feat) FSL tells me the directory contains no stats/cope image Is there an example on how to do this? Thanks Clas The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users