Hi,

We are trying to run the latest version of HCP pipelines on a Centos 7 machine.

According to instructions we are using HCP custom version of FreeSurfer 
(5.3.0-HCP).

Pipeline crashed when running 

mris_make_surfaces

 

with error

mris_make_surfaces: error while loading shared libraries: libnetcdf.so.6: 
cannot open shared object file: No such file or directory

 

I found the previous thread on this issue

https://www.mail-archive.com/hcp-users@humanconnectome.org/msg00782.html

 

I have 2 questions:

 
Where can we find the right rpm for installing libnetcdf.so.6 on Centos 7 ?
 
If we don’t use the HCP custom version of FreeSurfer (5.3.0-HCP), but the 
normal one that does not require libnetcdf.so.6, what would be the effect on 
the resulted cortical representation?
 

Thank you very much

Best 

Giorgos

 


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