I guess this is an excellent example of why folks need to keep CCing the list and including their previous replies in their messages. This user did solve the problem by trying FSL 6.0.1, which is required by version 4.0.0 of the HCP Pipelines.
Matt. From: Wilhelm Malloni <[email protected]> Date: Tuesday, May 14, 2019 at 3:40 AM To: "Glasser, Matthew" <[email protected]> Cc: "[email protected]" <[email protected]> Subject: error about subcortical processing in HCP fMRI-surface pipeline Dear Dr. Glasser, we are experiencing the very same error posted here https://www.mail-archive.com/[email protected]/msg07616.html but we didn’t find a solution. After the GenericfMRIVolumeProcessingPipeline.sh we got a resolution of 91x108x91 but the GenericFMRISurfaceProcessingPipeline.sh probably needs a resolution of 91x109x91. So, while running the: wb_command -cifti-create-dense-timeseries /{PATH to subject}/MNINonLinear/Results/{task name}/{task name}_temp_subject.dtseries.nii -volume /{PATH to subject}/MNINonLinear/Results/{task name}/{task name}.nii.gz /{PATH to subject}/MNINonLinear/ROIs/ROIs.2.nii.gz we got this error too: ERROR: label volume has a different volume space than data volume How can we overcome this error? Environment: 1. Debian 9.0 2. HCP pipeline 4.0.0 3. Workbench 1.3.2 4. FreeSurfer 6.0 5. FSL 5.0.11 Thank you so much for your precious time. Best, Wilhelm Malloni ------------------------------------------- Dr. rer. nat. Wilhelm Malloni Experimental Psychology University of Regensburg Universitaetsstrasse 31 93053 Regensburg, Germany Tel: ++49 941 943 3856 Fax: ++49 941 943 3233 Room: PT 4.0.36B email: [email protected]<mailto:[email protected]> ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
