Hi Seungyong, There is a command-line Aspera client, but it’s not supported for the HCP data because it would require each user to have account on the Aspera server. However, from the landing page in ConnectomeDB, You’ll see an “Explore Subjects” download. If you select, say the “100 Unrelated Subjects”, you’ll go to a “Subject Dashboard” page displaying those subjects. There, you’ll find an easily modifiable filter where you can supply just the subjects you want to download. Then, when you click “Download Images”, it will contain just the subjects you want and you can just queue all the subjects for download.
Regards, Mike From: [email protected] <[email protected]> On Behalf Of Seung Yong Hwang Sent: Wednesday, May 15, 2019 11:41 PM To: Harms, Michael <[email protected]> Cc: [email protected] Subject: Re: [HCP-Users] Question on download dMRI. Hello, Thanks for the answer for my question. However, I am wondering whether there is a way to download the dataset by shell or R if it is not available on AWS. Best, Seungyong 2019년 5월 15일 (수) 오후 8:29, Harms, Michael <[email protected]<mailto:[email protected]>>님이 작성: Hi, If you want to try downloading via https://db.humanconnectome.org and Aspera, simply select the “All Family Subjects” category under “Download Image Data” and then select the “Diffusion” modality on the “Download Packages” page. That will select all 1065 subjects with Diffusion data – it’s 1.3 TB of data. Certainly no need to select the subjects one at a time. Cheers, -MH -- Michael Harms, Ph.D. ----------------------------------------------------------- Associate Professor of Psychiatry Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: [email protected]<mailto:[email protected]> From: <[email protected]<mailto:[email protected]>> on behalf of Seung Yong Hwang <[email protected]<mailto:[email protected]>> Date: Wednesday, May 15, 2019 at 8:59 PM To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [HCP-Users] Question on download dMRI. Dear all, Currently, I am struggling with diffusion MRI download. Since I need to process almost all subjects (1200 subjects) for my research, I can download only about 400 dMRI data through AWS. If dMRI data are available on AWS, they are under the directory, "HCP/subject_id/T1w/Diffusion" - (subejct_id: 211215 etc..) So, I can download it by shell and R. However, if dMRI data is not on AWS, I need to download it by Aspera and click all 800 subjects. (subject_id, 257946, 962058 etc..) It is almost impossible to download it manually. So, I am wondering anyone knows the way to download these 800 dMRI data automatically. Best, Seungyong -- Seungyong (SEAN) Hwang Ph.D Candidate Graduate Group in Biostatistics University of California, DAVIS _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. -- Seungyong (SEAN) Hwang Ph.D Candidate Graduate Group in Biostatistics University of California, DAVIS _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
