This may not be related to your particular problem, but you need to have
FSL 6.0.1 for some of the pipelines (MR FIX in particular). Using fslhd on
the BothPhases and Mask files should give others on the list some
information to work with.
Tim
On Tue, May 21, 2019 at 8:18 AM Simon Wein <
simon.w...@psychologie.uni-regensburg.de> wrote:
> Dear all,
>
> we are experiencing problems when performing the fMRI volumetric
> processing with "GenericfMRIVolumeProcessingPipeline.sh":
>
> Image Exception : #3 :: Attempted to multiply images of different sizes
> terminate called after throwing an instance of 'std::runtime_error'
> what(): Attempted to multiply images of different sizes
> /loctmp/CUDA/Pipelines-master_fs6/global/scripts/TopupPreprocessingAll.sh:
> line 269: 10710 Aborted ${FSLDIR}/bin/fslmaths
> ${WD}/BothPhases -abs -add 1 -mas ${WD}/Mask -dilM -dilM -dilM -dilM -dilM
> ${WD}/BothPhases
>
>
> Environment:
> 1. Debian 9.0
> 2. HCP pipeline 4.0.0
> 3. Workbench 1.3.2
> 4. FreeSurfer 6.0
> 5. FSL 6.0
> 6. gradunwarp (HCP) 1.0.3
>
>
> We would be thankful for any help!
>
> Kind regards
> Simon
>
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> HCP-Users@humanconnectome.org
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>
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