Looks like you can use wb_command -cifti-find-clusters with those 4 files. Metric refers to a gifti file.
Matt. From: <hcp-users-boun...@humanconnectome.org> on behalf of Zaixu Cui <cuizaixu19891...@gmail.com> Date: Saturday, June 8, 2019 at 11:53 PM To: "HCP-Users@humanconnectome.org" <HCP-Users@humanconnectome.org> Subject: [HCP-Users] Cluster threshold by wb_command -metric-find-clusters Hi developers, I am trying to do cluster threshold by using command wb_command -metric-find-clusters. Thee manual is as follows: wb_command -metric-find-clusters <surface> - the surface to compute on <metric-in> - the input metric <value-threshold> - threshold for data values <minimum-area> - threshold for cluster area, in mm^2 <metric-out> - output - the output metric I have metric file with cifti format (.dscalar.nii). I wonder what should be the surface file. I am working on the fsaverage5 space and have .surf.gii and .shape.gii files. fsaverage5.L.midthickness_va_avg.10k_fsavg_L.shape.gii fsaverage5.R.midthickness_va_avg.10k_fsavg_R.shape.gii fsaverage5_std_sphere.L.10k_fsavg_L.surf.gii fsaverage5_std_sphere.R.10k_fsavg_R.surf.gii Can I use these four files as surface input of this command? And I only have the surface to each hemisphere. Do I need to transform them into cfiti file? Could you remind which command can be used to convert the surface file into cifti. Thank you so much for the help always. Workbench is really an awesome software, which helps me a lot on my project. Best wishes - Zaixu _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users