Got it. It works. Thank you so much. Best Zaixu
On Sat, 8 Jun 2019 at 23:35, Glasser, Matthew <glass...@wustl.edu> wrote: > Looks like you can use wb_command -cifti-find-clusters with those 4 > files. Metric refers to a gifti file. > > > > Matt. > > > > *From: *<hcp-users-boun...@humanconnectome.org> on behalf of Zaixu Cui < > cuizaixu19891...@gmail.com> > *Date: *Saturday, June 8, 2019 at 11:53 PM > *To: *"HCP-Users@humanconnectome.org" <HCP-Users@humanconnectome.org> > *Subject: *[HCP-Users] Cluster threshold by wb_command > -metric-find-clusters > > > > Hi developers, > > > > I am trying to do cluster threshold by using command wb_command > -metric-find-clusters. > > > > Thee manual is as follows: > > wb_command -metric-find-clusters > > <surface> - the surface to compute on > > <metric-in> - the input metric > > <value-threshold> - threshold for data values > > <minimum-area> - threshold for cluster area, in mm^2 > > <metric-out> - output - the output metric > > > > I have metric file with cifti format (.dscalar.nii). I wonder what should > be the surface file. I am working on the fsaverage5 space and have > .surf.gii and .shape.gii files. > > fsaverage5.L.midthickness_va_avg.10k_fsavg_L.shape.gii > > fsaverage5.R.midthickness_va_avg.10k_fsavg_R.shape.gii > > fsaverage5_std_sphere.L.10k_fsavg_L.surf.gii > > fsaverage5_std_sphere.R.10k_fsavg_R.surf.gii > > > > Can I use these four files as surface input of this command? And I only > have the surface to each hemisphere. Do I need to transform them into cfiti > file? Could you remind which command can be used to convert the surface > file into cifti. > > > > Thank you so much for the help always. Workbench is really an awesome > software, which helps me a lot on my project. > > > > Best wishes > > - > > Zaixu > > > > > > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
