Joe, This is a known dependency issue between the tools.
Please run three steps: ./configure make --> after this step all tools will be build necessary to run make check make check Thank you! Elena ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Elena Pourmal The HDF Group http://hdfgroup.org 1800 So. Oak St., Suite 203, Champaign IL 61820 217.531.6112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ On Oct 31, 2013, at 11:58 AM, H. Joe Lee <[email protected]> wrote: > $./configure && make check > > failed on the latest Mac OS X Mavericks (10.9) with the following errors: > > Running h5import out1.bin -c out3.h5import -o out1.h5 > testh5dump.sh: line 887: > /Users/hyoklee/src/hdf5-1.8.12-pre2/tools/h5dump/../h5import/h5import: > No such file or directory > > *FAILED* > > Running h5diff tbinary.h5 out1.h5 /integer /integer > h5diff: <out1.h5>: unable to open file > > *FAILED* > > Running h5import out1.bin -c tbin1.ddl -o out1D.h5 > testh5dump.sh: line 887: > /Users/hyoklee/src/hdf5-1.8.12-pre2/tools/h5dump/../h5import/h5import: > No such file or directory > > *FAILED* > > Running h5diff tbinary.h5 out1D.h5 /integer /integer > h5diff: <out1D.h5>: unable to open file > > *FAILED* > > Testing h5dump --enable-error-stack -b BE -d float -o out2.bin tbinary PASSED > > Testing h5dump --enable-error-stack -d integer -o out3.bin -b NATIVE t PASSED > > Running h5import out3.bin -c out3.h5import -o out3.h5 > testh5dump.sh: line 887: > /Users/hyoklee/src/hdf5-1.8.12-pre2/tools/h5dump/../h5import/h5import: > No such file or directory > > *FAILED* > > Running h5diff tbinary.h5 out3.h5 /integer /integer > h5diff: <out3.h5>: unable to open file > > *FAILED* > > Running h5import out3.bin -c tbin3.ddl -o out3D.h5 > testh5dump.sh: line 887: > /Users/hyoklee/src/hdf5-1.8.12-pre2/tools/h5dump/../h5import/h5import: > No such file or directory > > *FAILED* > > Running h5diff tbinary.h5 out3D.h5 /integer /integer > h5diff: <out3D.h5>: unable to open file > > *FAILED* > > Testing h5dump --enable-error-stack -d double -b FILE -o out4.bin tbin PASSED > > Testing h5dump --enable-error-stack tdatareg.h5 PASSED > > Testing h5dump --enable-error-stack -R tdatareg.h5 PASSED > > Testing h5dump --enable-error-stack tattrreg.h5 PASSED > > Testing h5dump --enable-error-stack -R tattrreg.h5 PASSED > > Testing h5dump --enable-error-stack -d /Dataset1 -s 0 -R -y -o tbinreg PASSED > > Testing h5dump --enable-error-stack --group=1 --sort_by=creation_order PASSED > > Testing h5dump --enable-error-stack --group=1 --sort_by=creation_order PASSED > > Testing h5dump --enable-error-stack -g 2 -q name -z ascending tordergr PASSED > > Testing h5dump --enable-error-stack -g 2 -q name -z descending torderg PASSED > > Testing h5dump --enable-error-stack -q creation_order tordergr.h5 PASSED > > Testing h5dump --enable-error-stack -H --sort_by=name --sort_order=asc PASSED > > Testing h5dump --enable-error-stack -H --sort_by=name --sort_order=des PASSED > > Testing h5dump --enable-error-stack -H --sort_by=creation_order --sort PASSED > > Testing h5dump --enable-error-stack -H --sort_by=creation_order --sort PASSED > > Testing h5dump --enable-error-stack --sort_by=name --sort_order=ascend PASSED > > Testing h5dump --enable-error-stack --sort_by=name --sort_order=descen PASSED > > Testing h5dump --enable-error-stack -m %.7f tfpformat.h5 PASSED > > Testing h5dump --enable-error-stack textlinksrc.h5 PASSED > > Testing h5dump --enable-error-stack textlinkfar.h5 PASSED > > Testing h5dump --enable-error-stack textlink.h5 PASSED > > Testing h5dump --enable-error-stack filter_fail.h5 PASSED > > Testing h5dump --enable-error-stack -y -o tall-6.txt -d /g1/g1.1/dset1 PASSED > > h5dump tests failed with 8 errors. > > 15.77 real 7.63 user 7.33 sys > > make[5]: *** [testh5dump.sh.chkexe_] Error 1 > > make[4]: *** [build-check-s] Error 2 > > make[3]: *** [test] Error 2 > > make[2]: *** [check-am] Error 2 > > make[1]: *** [check-recursive] Error 1 > > make: *** [check-recursive] Error 1 > > ----- > > All tests passed if I run > > $./configure && make && make check > > > -- > HDF: Software that Powers Science > > > On Wed, Oct 30, 2013 at 5:44 PM, Elena Pourmal <[email protected]> wrote: >> Michael, >> >> We did discuss the issue, and agreed that this should be addressed. I >> created JIRA issue HDFFV-8557 and we will see what we can do for this >> release; will not promise but will try. >> >> Elena >> >> >> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >> Elena Pourmal The HDF Group http://hdfgroup.org >> 1800 So. Oak St., Suite 203, Champaign IL 61820 >> 217.531.6112 >> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >> >> >> >> >> On Oct 28, 2013, at 10:08 AM, Michael Jackson <[email protected]> >> wrote: >> >> I found a "bug" that I am hoping is a quick fix. >> >> If the following file: >> config/cmake/H5pubconf.h.in >> >> at line 750 is the following: >> >> #define VERSION "@HDF5_PACKAGE_VERSION@" >> >> The issue that I am having is a few other libraries that I am using also >> define the generic "VERSION" macro. I am wondering if we can change that to >> >> #define H5_VERSION "@HDF5_PACKAGE_VERSION@" >> >> There are 2 more >> /* Number of bits in a file offset, on hosts where this is settable. */ >> #cmakedefine _FILE_OFFSET_BITS >> >> /* Define for large files, on AIX-style hosts. */ >> #cmakedefine _LARGE_FILES >> >> that are also a bit "generic" and should probably have the H5_ prefix >> applied to them also. >> >> A quick compile on OS X seems to indicate it will compile. External >> libraries that may be looking for that #define might have issues. >> >> Thoughts? >> >> Thanks >> >> >> >> _______________________________________________ >> Hdf-forum is for HDF software users discussion. >> [email protected] >> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >> > > _______________________________________________ > Hdf-forum is for HDF software users discussion. > [email protected] > http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
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