Elena, I know that the 3 steps will pass all tests as I wrote at the last line of the previous message.
By the way, 'make distclean' doesn't seem to clean all test files. hdf-idap-[5:01pm]~/src>diff -r hdf5-1.8.12-pre2 hdf5-1.8.12-pre2.joe/ Only in hdf5-1.8.12-pre2: Makefile Only in hdf5-1.8.12-pre2.joe/test: dtypes10 Only in hdf5-1.8.12-pre2.joe/test: testdir1 Only in hdf5-1.8.12-pre2.joe/test: th5o_file Only in hdf5-1.8.12-pre2.joe/test: tsohm.h5 Only in hdf5-1.8.12-pre2.joe/test: tsohm_dst.h5 Only in hdf5-1.8.12-pre2.joe/test: tsohm_src.h5 Only in hdf5-1.8.12-pre2.joe/tools/h5dump: testfiles Only in hdf5-1.8.12-pre2.joe/tools/h5jam/testfiles: h5jam-help.txt.err-sav Only in hdf5-1.8.12-pre2.joe/tools/h5jam/testfiles: h5jam-help.txt.out-sav Only in hdf5-1.8.12-pre2.joe/tools/h5jam/testfiles: h5jam-ub-nohdf5.txt.err-sav Only in hdf5-1.8.12-pre2.joe/tools/h5jam/testfiles: h5jam-ub-nohdf5.txt.out-sav Only in hdf5-1.8.12-pre2.joe/tools/h5jam/testfiles: h5unjam-help.txt.err-sav Only in hdf5-1.8.12-pre2.joe/tools/h5jam/testfiles: h5unjam-help.txt.out-sav Only in hdf5-1.8.12-pre2.joe/tools/h5ls: testfiles Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: h5diff_attr1.h5 Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00000.h5 Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00001.h5 Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00002.h5 Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00003.h5 Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00004.h5 Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00005.h5 Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00006.h5 Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00007.h5 Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00008.h5 Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00009.h5 Only in hdf5-1.8.12-pre2.joe/tools/h5repack/testfiles: tfamily00010.h5 Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_nested_lp.ls Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_nested_mult_lp.ls Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_nested_mult_p.ls Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_nested_p.ls Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_several.ls Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_several_l.ls Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_several_p.ls Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_several_v.ls Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_single.ls Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_single_l.ls Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_single_p.ls Only in hdf5-1.8.12-pre2.joe/tools/misc/testfiles: h5mkgrp_single_v.ls From: Hdf-forum [mailto:[email protected]] On Behalf Of Elena Pourmal Sent: Thursday, October 31, 2013 4:20 PM To: HDF Users Discussion List Subject: Re: [Hdf-forum] HDF5 1.8.12 release candidate (pre2) is available for testing Joe, This is a known dependency issue between the tools. Please run three steps: ./configure make --> after this step all tools will be build necessary to run make check make check Thank you! Elena ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Elena Pourmal The HDF Group http://hdfgroup.org 1800 So. Oak St., Suite 203, Champaign IL 61820 217.531.6112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ On Oct 31, 2013, at 11:58 AM, H. Joe Lee <[email protected]<mailto:[email protected]>> wrote: $./configure && make check failed on the latest Mac OS X Mavericks (10.9) with the following errors: Running h5import out1.bin -c out3.h5import -o out1.h5 testh5dump.sh: line 887: /Users/hyoklee/src/hdf5-1.8.12-pre2/tools/h5dump/../h5import/h5import: No such file or directory *FAILED* Running h5diff tbinary.h5 out1.h5 /integer /integer h5diff: <out1.h5>: unable to open file *FAILED* Running h5import out1.bin -c tbin1.ddl -o out1D.h5 testh5dump.sh: line 887: /Users/hyoklee/src/hdf5-1.8.12-pre2/tools/h5dump/../h5import/h5import: No such file or directory *FAILED* Running h5diff tbinary.h5 out1D.h5 /integer /integer h5diff: <out1D.h5>: unable to open file *FAILED* Testing h5dump --enable-error-stack -b BE -d float -o out2.bin tbinary PASSED Testing h5dump --enable-error-stack -d integer -o out3.bin -b NATIVE t PASSED Running h5import out3.bin -c out3.h5import -o out3.h5 testh5dump.sh: line 887: /Users/hyoklee/src/hdf5-1.8.12-pre2/tools/h5dump/../h5import/h5import: No such file or directory *FAILED* Running h5diff tbinary.h5 out3.h5 /integer /integer h5diff: <out3.h5>: unable to open file *FAILED* Running h5import out3.bin -c tbin3.ddl -o out3D.h5 testh5dump.sh: line 887: /Users/hyoklee/src/hdf5-1.8.12-pre2/tools/h5dump/../h5import/h5import: No such file or directory *FAILED* Running h5diff tbinary.h5 out3D.h5 /integer /integer h5diff: <out3D.h5>: unable to open file *FAILED* Testing h5dump --enable-error-stack -d double -b FILE -o out4.bin tbin PASSED Testing h5dump --enable-error-stack tdatareg.h5 PASSED Testing h5dump --enable-error-stack -R tdatareg.h5 PASSED Testing h5dump --enable-error-stack tattrreg.h5 PASSED Testing h5dump --enable-error-stack -R tattrreg.h5 PASSED Testing h5dump --enable-error-stack -d /Dataset1 -s 0 -R -y -o tbinreg PASSED Testing h5dump --enable-error-stack --group=1 --sort_by=creation_order PASSED Testing h5dump --enable-error-stack --group=1 --sort_by=creation_order PASSED Testing h5dump --enable-error-stack -g 2 -q name -z ascending tordergr PASSED Testing h5dump --enable-error-stack -g 2 -q name -z descending torderg PASSED Testing h5dump --enable-error-stack -q creation_order tordergr.h5 PASSED Testing h5dump --enable-error-stack -H --sort_by=name --sort_order=asc PASSED Testing h5dump --enable-error-stack -H --sort_by=name --sort_order=des PASSED Testing h5dump --enable-error-stack -H --sort_by=creation_order --sort PASSED Testing h5dump --enable-error-stack -H --sort_by=creation_order --sort PASSED Testing h5dump --enable-error-stack --sort_by=name --sort_order=ascend PASSED Testing h5dump --enable-error-stack --sort_by=name --sort_order=descen PASSED Testing h5dump --enable-error-stack -m %.7f tfpformat.h5 PASSED Testing h5dump --enable-error-stack textlinksrc.h5 PASSED Testing h5dump --enable-error-stack textlinkfar.h5 PASSED Testing h5dump --enable-error-stack textlink.h5 PASSED Testing h5dump --enable-error-stack filter_fail.h5 PASSED Testing h5dump --enable-error-stack -y -o tall-6.txt -d /g1/g1.1/dset1 PASSED h5dump tests failed with 8 errors. 15.77 real 7.63 user 7.33 sys make[5]: *** [testh5dump.sh.chkexe_] Error 1 make[4]: *** [build-check-s] Error 2 make[3]: *** [test] Error 2 make[2]: *** [check-am] Error 2 make[1]: *** [check-recursive] Error 1 make: *** [check-recursive] Error 1 ----- All tests passed if I run $./configure && make && make check -- HDF: Software that Powers Science On Wed, Oct 30, 2013 at 5:44 PM, Elena Pourmal <[email protected]<mailto:[email protected]>> wrote: Michael, We did discuss the issue, and agreed that this should be addressed. I created JIRA issue HDFFV-8557 and we will see what we can do for this release; will not promise but will try. Elena ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Elena Pourmal The HDF Group http://hdfgroup.org 1800 So. Oak St., Suite 203, Champaign IL 61820 217.531.6112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ On Oct 28, 2013, at 10:08 AM, Michael Jackson <[email protected]<mailto:[email protected]>> wrote: I found a "bug" that I am hoping is a quick fix. If the following file: config/cmake/H5pubconf.h.in at line 750 is the following: #define VERSION "@HDF5_PACKAGE_VERSION@" The issue that I am having is a few other libraries that I am using also define the generic "VERSION" macro. I am wondering if we can change that to #define H5_VERSION "@HDF5_PACKAGE_VERSION@" There are 2 more /* Number of bits in a file offset, on hosts where this is settable. */ #cmakedefine _FILE_OFFSET_BITS /* Define for large files, on AIX-style hosts. */ #cmakedefine _LARGE_FILES that are also a bit "generic" and should probably have the H5_ prefix applied to them also. A quick compile on OS X seems to indicate it will compile. External libraries that may be looking for that #define might have issues. Thoughts? Thanks _______________________________________________ Hdf-forum is for HDF software users discussion. [email protected]<mailto:[email protected]> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org _______________________________________________ Hdf-forum is for HDF software users discussion. [email protected]<mailto:[email protected]> http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
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