HDF Forum, I’m actually trying to build NETCDF-4 (with parallel I/O) but I keep running into the following link error which appears to be related to HDF5 v1.8.13:
libtool: link: mpicc -g -O2 -o ncgen3 main.o load.o escapes.o getfill.o init.o genlib.o ncgentab.o -L/afs/crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/hdf5-1.8.13/RELEASE/gcc/lib/ ../liblib/.libs/libnetcdf.a /afs/crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/hdf5-1.8.13/RELEASE/gcc/lib/libhdf5_hl.so /afs/crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/hdf5-1.8.13/RELEASE/gcc/lib/libhdf5.so -lz -ldl -lm -lcurl -Wl,-rpath -Wl,/afs/crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/hdf5-1.8.13/RELEASE/gcc/lib -Wl,-rpath -Wl,/afs/crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/hdf5-1.8.13/RELEASE/gcc/lib ../liblib/.libs/libnetcdf.a(libnetcdf4_la-nc4file.o): In function `nc4_open_file': /afs/crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/netcdf-4.3.2/libsrc4/nc4file.c:2174: undefined reference to `H5Pset_fapl_mpiposix’ I have built HDF5 v1.8.13 using MPICH v3 and GCC v4.4.7 on a RHEL6 Linux system. My HDF5 configure options are as follows: ./configure --prefix=/my/install/path CC=mpicc FC=mpif90 CXX=mpicxx --enable-static --enable-shared --enable-parallel Is there something I am doing wrong that prevents H5Pset_fapl_mpiposix from being built? Thanks in advance, Tim.
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