MPI POSIX VFD was removed from HDF5 1.8.13. We submitted a patch to netCDF folks.
See https://github.com/Unidata/netcdf-c/commit/435d8a03ed28bb5ad63aff12cbc6ab91531b6bc8 Elena ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Elena Pourmal The HDF Group http://hdfgroup.org 1800 So. Oak St., Suite 203, Champaign IL 61820 217.531.6112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ On May 15, 2014, at 2:09 PM, Timothy Stitt <[email protected]> wrote: > HDF Forum, > > I’m actually trying to build NETCDF-4 (with parallel I/O) but I keep running > into the following link error which appears to be related to HDF5 v1.8.13: > > libtool: link: mpicc -g -O2 -o ncgen3 main.o load.o escapes.o getfill.o > init.o genlib.o ncgentab.o > -L/afs/crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/hdf5-1.8.13/RELEASE/gcc/lib/ > ../liblib/.libs/libnetcdf.a > /afs/crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/hdf5-1.8.13/RELEASE/gcc/lib/libhdf5_hl.so > > /afs/crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/hdf5-1.8.13/RELEASE/gcc/lib/libhdf5.so > -lz -ldl -lm -lcurl -Wl,-rpath > -Wl,/afs/crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/hdf5-1.8.13/RELEASE/gcc/lib > -Wl,-rpath > -Wl,/afs/crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/hdf5-1.8.13/RELEASE/gcc/lib > ../liblib/.libs/libnetcdf.a(libnetcdf4_la-nc4file.o): In function > `nc4_open_file': > /afs/crc.nd.edu/user/t/tstitt/Projects/GenomeMapper/genomemapper/utilties/netcdf-4.3.2/libsrc4/nc4file.c:2174: > undefined reference to `H5Pset_fapl_mpiposix’ > > I have built HDF5 v1.8.13 using MPICH v3 and GCC v4.4.7 on a RHEL6 Linux > system. My HDF5 configure options are as follows: > > ./configure --prefix=/my/install/path CC=mpicc FC=mpif90 CXX=mpicxx > --enable-static --enable-shared --enable-parallel > > Is there something I am doing wrong that prevents H5Pset_fapl_mpiposix from > being built? > > Thanks in advance, > > Tim. > > _______________________________________________ > Hdf-forum is for HDF software users discussion. > [email protected] > http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
_______________________________________________ Hdf-forum is for HDF software users discussion. [email protected] http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
