I had no time to test all possible configurations (maybe tomorrow) but I have some (weird) news !
When I do that : export CMAKE_PREFIX_PATH="$1:$1/SHARE/CMAKE:$CMAKE_PREFIX_PATH" export CMAKE_MODULE_PATH="$1/share/cmake:$CMAKE_MODULE_PATH" export CMAKE_INCLUDE_PATH="$1/include:$CMAKE_INCLUDE_PATH" export CMAKE_LIBRARY_PATH="$1/lib:$CMAKE_LIBRARY_PATH" export CMAKE_PROGRAM_PATH="$1/bin:$CMAKE_PROGRAM_PATH" cmake -DCMAKE_INSTALL_PREFIX:PATH=$1 -DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo -DBUILD_SHARED_LIBS:BOOL=ON -DHDF5_BUILD_HL_LIB:BOOL=ON -DHDF5_BUILD_TOOLS:BOOL=ON -DHDF_ENABLE_LARGE_FILE:BOOL=ON -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=ON -DZLIB_INCLUDE_DIR:PATH="$1/include" -DZLIB_LIBRARY:FILEPATH="$1/lib/libz.so" -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=ON -DSZIP_INCLUDE_DIR:PATH="$1/include" -DSZIP_LIBRARY:FILEPATH="$1/lib/libszip.so" .. if [ $? -ne 0 ]; then exit 1; fi I get that in the configure log message (NO error message) : -- Filter ZLIB is ON -- Filter SZIP is ON -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: SZIP_LIBRARY ZLIB_LIBRARY And finally that at build time : [ 36%] Linking C shared library ../bin/libhdf5.so /USR/BIN/LD.BFD.REAL: CAN'T FIND -LZLIB_EXPORT_LIBRARIES /USR/BIN/LD.BFD.REAL: CAN'T FIND -LSZIP_EXPORT_LIBRARIES Now when I do that : export CMAKE_PREFIX_PATH="$1:$CMAKE_PREFIX_PATH" # SUPPRESS $1/SHARE/CMAKE export CMAKE_MODULE_PATH="$1/share/cmake:$CMAKE_MODULE_PATH" export CMAKE_INCLUDE_PATH="$1/include:$CMAKE_INCLUDE_PATH" export CMAKE_LIBRARY_PATH="$1/lib:$CMAKE_LIBRARY_PATH" export CMAKE_PROGRAM_PATH="$1/bin:$CMAKE_PROGRAM_PATH" cmake -DCMAKE_INSTALL_PREFIX:PATH=$1 -DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo -DBUILD_SHARED_LIBS:BOOL=ON -DHDF5_BUILD_HL_LIB:BOOL=ON -DHDF5_BUILD_TOOLS:BOOL=ON -DHDF_ENABLE_LARGE_FILE:BOOL=ON -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=ON -DZLIB_INCLUDE_DIR:PATH="$1/include" -DZLIB_LIBRARY:FILEPATH="$1/lib/libz.so" -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=ON -DSZIP_INCLUDE_DIR:PATH="$1/include" -DSZIP_LIBRARY:FILEPATH="$1/lib/libszip.so" .. if [ $? -ne 0 ]; then exit 1; fi I get that in configure log message : CMake Warning at CMakeFilters.cmake:43 (find_package): Could NOT find a package configuration file provided by "ZLIB" with any of the following names: ZLIBConfig.cmake zlib-config.cmake ADD THE INSTALLATION PREFIX OF "ZLIB" TO CMAKE_PREFIX_PATH OR SET "ZLIB_DIR" to a directory containing one of the above files. If "ZLIB" provides a separate development package or SDK, be sure it has been installed. -- Filter ZLIB is ON CMake Warning at CMakeFilters.cmake:90 (find_package): Could NOT find a package configuration file provided by "SZIP" with any of the following names: SZIPConfig.cmake szip-config.cmake ADD THE INSTALLATION PREFIX OF "SZIP" TO CMAKE_PREFIX_PATH OR SET "SZIP_DIR" to a directory containing one of the above files. If "SZIP" provides a separate development package or SDK, be sure it has been installed. -- Filter SZIP is ON But HDF5 COMPILES FINALLY ?! [ 0%] Built target H5detect [ 0%] Built target H5make_libsettings [ 36%] Built target hdf5 ... [ 99%] Built target perf_meta [100%] Built target zip_perf Note : this is because of the error messages (configure) that I added $1/share/cmake to CMAKE_PREFIX_PATH Can somebody explain me that ?!... This looks like black magic to me... Franck Note : my understanding is that $1/share/cmake should NOT be added to CMAKE_PREFIX_PATH. ~> man cmake CMAKE_PREFIX_PATH Path used for searching by FIND_XXX(), with appropriate suffixes added. Specifies a path which will be used by the FIND_XXX() commands. IT CONTAINS THE "BASE" DIRECTORIES, the FIND_XXX() commands append appropriate subdirectories to the base directories. So FIND_PROGRAM() ADDS /BIN to each of the directories in the path, FIND_LIBRARY() APPENDS /LIB to each of the directories, and FIND_PATH() and FIND_FILE() append /include . By default it is empty, it is intended to be set by the project. See also CMAKE_SYSTEM_PREFIX_PATH, CMAKE_INCLUDE_PATH, CMAKE_LIBRARY_PATH, CMAKE_PROGRAM_PATH. Le 2015-10-12 18:57, Allen Byrne a écrit : > Franck, > > You are correct that the standard zlib does not provide cmake compiled > binaries. We created the tarballs so that we could build the szip/zlib > libararies with the same options as the library. > > We do test with the "point to the system installed libs" option - > AFAIK, there > are no reported problems. > > Well, the options look correct. The ZSIP/ZLIB_EXPORT_LIBRARIES in the link > line is very strange. Where could that be coming from instead of the actual > name you supplied. > It is possible that something got confused in the cmake files - > because those > are names of variables used within our cmake-ified szip/zlib tarballs. > > Allen > > On Monday, October 12, 2015 06:22:26 PM houssen wrote: >> Hello, >> >> My understanding is that HDF5_ALLOW_EXTERNAL_SUPPORT should not be used >> (and defaults to NO) according to the doc : I tried to set it anyway. >> Also, on Ubuntu when I "sudo apt-get install" zlib, it seems I get an >> autotools install, so CMake does not find the zlib install (missing >> Find*.cmake): this is why I tried to build from source and install ZLib >> / SZip (I use ZLIB / SZIP tarballs provided by >> www.hdfgroup.org/ftp/HDF5/releases/... as they have been patched to >> create Find*.cmake files at install time). >> >> My last try (called within a bash script where $1 is a path to the >> final install where libz and libszip are already installed) : >> export CMAKE_PREFIX_PATH="$1:$1/share/cmake:$CMAKE_PREFIX_PATH" >> export CMAKE_MODULE_PATH="$1/share/cmake:$CMAKE_MODULE_PATH" >> export CMAKE_INCLUDE_PATH="$1/include:$CMAKE_INCLUDE_PATH" >> export CMAKE_LIBRARY_PATH="$1/lib:$CMAKE_LIBRARY_PATH" >> export CMAKE_PROGRAM_PATH="$1/bin:$CMAKE_PROGRAM_PATH" >> cmake -DCMAKE_INSTALL_PREFIX:PATH=$1 >> -DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo -DBUILD_SHARED_LIBS:BOOL=ON >> >> -DHDF5_BUILD_HL_LIB:BOOL=ON -DHDF5_BUILD_TOOLS:BOOL=ON >> -DHDF_ENABLE_LARGE_FILE:BOOL=ON >> -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING="NO" >> >> -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=ON >> -DZLIB_INCLUDE_DIR:PATH="$1/include" >> -DZLIB_LIBRARY:FILEPATH="$1/lib/libz.so" >> -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=ON >> -DSZIP_INCLUDE_DIR:PATH="$1/include" >> -DSZIP_LIBRARY:FILEPATH="$1/lib/libszip.so" .. >> >> Note : I use now -DZLIB_LIBRARY:FILEPATH / -DSZIP_LIBRARY:FILEPATH >> according to the doc. >> >> Gives me this : >> [ 36%] Linking C shared library ../bin/libhdf5.so >> /usr/bin/ld.bfd.real: can't find -lZLIB_EXPORT_LIBRARIES >> /usr/bin/ld.bfd.real: can't find -lSZIP_EXPORT_LIBRARIES >> /usr/bin/ld.bfd.real: can't find -lZLIB_EXPORT_LIBRARIES >> /usr/bin/ld.bfd.real: can't find -lSZIP_EXPORT_LIBRARIES >> >> I miss something but can't figure our what ?... I guess options are >> upsetting each other... >> >> Franck >> >> Le 2015-10-12 15:56, Allen Byrne a écrit : >> > Franck, >> > >> > HDF5_ALLOW_EXTERNAL_SUPPORT is not a BOOL, it is a STRING "NO, >> > >> > SVN, TGZ". >> > >> > Allen >> > >> > On Sunday, October 11, 2015 06:23:49 PM houssen wrote: >> >> Hello, >> >> >> >> How to build HDF5 (1.8.15) with ZLib and SZIP (on Ubuntu-14.04) ? >> >> >> >> With this (called within a bash script where $1 is a path to the >> >> final >> >> install where libz and libszip are already installed) : >> >> export CMAKE_PREFIX_PATH="$1/share/cmake:$CMAKE_PREFIX_PATH" >> >> export CMAKE_MODULE_PATH="$1/share/cmake:$CMAKE_MODULE_PATH" >> >> export CMAKE_INCLUDE_PATH="$1/include:$CMAKE_INCLUDE_PATH" >> >> export CMAKE_LIBRARY_PATH="$1/lib:$CMAKE_LIBRARY_PATH" >> >> export CMAKE_PROGRAM_PATH="$1/bin:$CMAKE_PROGRAM_PATH" >> >> cmake -DCMAKE_INSTALL_PREFIX:PATH=$1 >> >> -DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo -DBUILD_SHARED_LIBS:BOOL=ON >> >> >> >> >> >> >> >> -DHDF5_BUILD_HL_LIB:BOOL=ON -DHDF5_BUILD_TOOLS:BOOL=ON >> >> >> >> -DHDF_ENABLE_LARGE_FILE:BOOL=ON >> >> >> >> >> >> >> >> -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=ON >> >> >> >> -DZLIB_INCLUDE_DIR:PATH="$1/include" >> >> -DZLIB_LIBRARY:PATH="$1/lib/libz.so" >> >> >> >> >> >> >> >> -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=ON >> >> >> >> -DSZIP_INCLUDE_DIR:PATH="$1/include" >> >> -DSZIP_LIBRARY_RELEASE:PATH="$1/lib/libszip.so" >> >> -DHDF5_ENABLE_SZIP_ENCODING:BOOL=ON .. >> >> I got this : >> >> [ 0%] Linking C shared library ../bin/libhdf5.so >> >> /usr/bin/ld.bfd.real: can't find -lZLIB_EXPORT_LIBRARIES >> >> /usr/bin/ld.bfd.real: can't find -lSZIP_EXPORT_LIBRARIES >> >> /usr/bin/ld.bfd.real: can't find -lZLIB_EXPORT_LIBRARIES >> >> /usr/bin/ld.bfd.real: can't find -lSZIP_EXPORT_LIBRARIES >> >> collect2: error: ld returned 1 exit status >> >> >> >> With this : >> >> cmake -DCMAKE_INSTALL_PREFIX:PATH=$1 >> >> -DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo -DBUILD_SHARED_LIBS:BOOL=ON >> >> >> >> >> >> >> >> -DHDF5_BUILD_HL_LIB:BOOL=ON -DHDF5_BUILD_TOOLS:BOOL=ON >> >> >> >> -DHDF_ENABLE_LARGE_FILE:BOOL=ON >> >> >> >> >> >> >> >> -DHDF5_ALLOW_EXTERNAL_SUPPORT:BOOL=ON >> >> >> >> -DZLIB_USE_EXTERNAL:BOOL=ON >> >> -DSZIP_USE_EXTERNAL:BOOL=ON >> >> >> >> >> >> >> >> -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=ON >> >> >> >> -DZLIB_URL:PATH="https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.15/s >> >> rc/ ZLib.tar.gz" >> >> >> >> -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=ON >> >> >> >> -DHDF5_ENABLE_SZIP_ENCODING:BOOL=ON >> >> >> >> -DSZIP_URL:PATH="https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.15/s >> >> rc/ SZip.tar.gz" .. >> >> I got this : >> >> >> >> CMake Error at CMakeFilters.cmake:66 (message): >> >> ZLib is Required for ZLib support in HDF5 >> >> >> >> Franck >> >> >> >> >> >> _______________________________________________ >> >> Hdf-forum is for HDF software users discussion. >> >> [email protected] >> >> >> >> http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >> >> Twitter: https://twitter.com/hdf5 >> >> _______________________________________________ >> Hdf-forum is for HDF software users discussion. >> [email protected] >> http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >> Twitter: https://twitter.com/hdf5
_______________________________________________ Hdf-forum is for HDF software users discussion. [email protected] http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org Twitter: https://twitter.com/hdf5
