Hello Barbara,
Thank you for your reply. I reinstall my ifort2018 and read the readme
carefully, change the figure line to the following two choices:
"FC=/opt/intel/bin/ifort ./configure --prefix=/usr/local/hdf5 --enable-fortran"
"FC=/usr/local/bin/mpif90 ./configure --enable-parallel
--prefix=/usr/local/hdf5 --enable-fortran"
and then "make", but both of them have the same error:
"compilation aborted for H5f90global.F90 (code 1)
Makefile:996: recipe for target 'H5f90global.lo' failed
make[3]: *** [H5f90global.lo] Error 1
make[3]: Leaving directory '/home/ustc/Download/hdf5-1.10.1/fortran/src'
Makefile:864: recipe for target 'all' failed
make[2]: *** [all] Error 2
make[2]: Leaving directory '/home/ustc/Download/hdf5-1.10.1/fortran/src'
Makefile:811: recipe for target 'all-recursive' failed
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory '/home/ustc/Download/hdf5-1.10.1/fortran'
Makefile:650: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1"
I have already add:
"source /opt/intel/compilers_and_libraries_2018.1.163/linux/bin/compilervars.sh
intel64"
"export LD_LIBRARY_PATH=/usr/local/hdf5:${LD_LIBRARY_PATH}"
to my .bashrc
Best Regards,
Jie
-----原始邮件-----
发件人:"Barbara Jones" <[email protected]>
发送时间:2017-11-20 23:36:39 (星期一)
收件人: "HDF Users Discussion List" <[email protected]>
抄送: "HDF Helpdesk" <[email protected]>
主题: Re: [Hdf-forum] Errors when install HDF5
Hello Jie,
It looks like your HDF5 library is good. (Though the prefix directory specified
on the configure line is “usr/local/hdf5” and *not* “/usr/local/hdf5”.)
Regarding the error, there are examples in the share/ directory of the built
binaries that the “make check-install” is unsuccessfully attempting to compile
and run.
It is possible that the “make check-install” cannot find the HDF5 libraries.
You could try setting the path to the HDF5 libraries in LD_LIBRARY_PATH to see
if that helps (if building shared libraries).
You can also run the examples manually to see if that yields more information:
· Go to the location of your built HDF5 binaries. You will see a
“share” directory (in addition to include/, lib/, etc..).
· Go into share/hdf5_examples/ and run “run-all-ex.sh”.
Do the examples run properly?
-Barbara
========================================================
Barbara Jones, The HDF Group Helpdesk, [email protected]
Support Services: https://www.hdfgroup.org/support/
========================================================
From: Hdf-forum [mailto:[email protected]] On Behalf Of ??
Sent: Monday, November 20, 2017 3:24 AM
To:[email protected]
Subject: [Hdf-forum] Errors when install HDF5
Hi all:
Recently I am going to use HDF5, I install it with following command:
“
./configure —prefix=usr/local/hdf5 —enable-fortran
make
make check
make install
make check-install
"
Everything goes well but when I run “make check-install”, it has some errors
say:
“
Testing run-fortran-ex.sh
=====================
################# h5_crtdat #################
Assembler messages:
error: can't create h5_crtdat.o: for write
messed up compiling h5_crtdat.f90
rm: cannot remove `*.o': No such file or directory
rm: cannot remove `*.h5': No such file or directory
Makefile:1207: recipe for target ‘installcheck-local’ failed
make[3]: *** [installcheck-local] Error 1
make[3]: Leaving directory `/home/ustc/Download/hdf5-1.10.1/fortran/examples’
Makefile:1244: recipe for target ’installcheck-local’ failed
make[2]: *** [installcheck-local] Error 1
make[2]: Leaving directory `/home/ustc/Download/hdf5-1.10.1/fortran’
Makefile:811: recipe for target ‘installcheck-recursive’ failed
make[1]: *** [installcheck-recursive] Error 1
make[1]: Leaving directory `/home/ustc/Download/hdf5-1.10.1/fortran’
Makefile:650: recipe for target ‘installcheck-recursive’ failed
make: *** [installcheck-recursive] Error 1
“
I have google a lot but it seems like a bug that haven’t been solved. I am
soooo puzzled by this problem, please help me.
My Ubuntu version is 16.04, ifort version is 18.0.1.
Best,
Jie_______________________________________________
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