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------------------------------------------------------------------------
On 2020-08-20T21:11:59+00:00 devurandom wrote:

Created attachment 655810
hugin-2019.2-lapack-blas.patch

cd /tmp/portage/media-gfx/hugin-2019.2.0/work/hugin-2019.2.0_build/src/tools && 
/usr/bin/cmake -E cmake_link_script CMakeFiles/cpclean.dir/link.txt --verbose=1
/usr/sbin/x86_64-pc-linux-gnu-g++ -pipe -O2 -march=znver1 -Wl,-O1 
-Wl,--as-needed -Wl,--hash-style=gnu -fopenmp 
CMakeFiles/cpclean.dir/cpclean.cpp.o -o cpclean  
-Wl,-rpath,/tmp/portage/media-gfx/hugin-2019.2.0/work/hugin-2019.2.0_build/src/hugin_base:
 ../hugin_base/libhuginbase.so.0.0 /usr/lib64/libpano13.so 
../foreign/levmar/libhuginlevmar.a /usr/lib64/libGLEW.so 
/usr/lib64/libboost_filesystem-mt.so /usr/lib64/libboost_system-mt.so 
/usr/lib64/liblapack.so /usr/lib64/libfftw3.so /usr/lib64/libvigraimpex.so 
/usr/lib64/libImath.so /usr/lib64/libIlmImf.so /usr/lib64/libIex.so 
/usr/lib64/libHalf.so /usr/lib64/libIlmThread.so /usr/lib64/libz.so 
/usr/lib64/libjpeg.so /usr/lib64/libtiff.so /usr/lib64/libpng.so 
/usr/lib64/libz.so /usr/lib64/libz.so /usr/lib64/libexiv2.so 
/usr/lib64/liblcms2.so -pthread /usr/lib64/libX11.so /usr/lib64/libpano13.so 
/usr/lib64/libboost_filesystem-mt.so /usr/lib64/libboost_system-mt.so 
/usr/lib64/liblapack.so /usr/lib64/libGL.so /usr/lib64/libGLU.so 
/usr/lib64/libGLEW.so /usr/lib64/libsqlite3.so /usr/lib64/libvigraimpex.so 
/usr/lib64/libjpeg.so /usr/lib64/libpng.so /usr/lib64/libtiff.so 
/usr/lib64/libexiv2.so /usr/lib64/liblcms2.so 
../hugin_base/libhuginbase.so.0.0: error: undefined reference to 'dgemm_'
collect2: error: ld returned 1 exit status


```
hugin-2019.2.0/src/foreign/levmar/misc_core.c:45:#define GEMM 
LM_MK_BLAS_NAME(gemm)
```

This function is a BLAS function:
https://en.wikipedia.org/wiki/Basic_Linear_Algebra_Subprograms#Level_3

Thus, since levmar is built as a static library, Hugin itself should
call `find_package(BLAS)` and `huginbase` should link against
`BLAS_LIBRARIES`.

Attached patch fixes this (in an admittedly slightly crude way) for me.

Upstream report: https://bugs.launchpad.net/hugin/+bug/1892420


Portage 3.0.4 (python 3.6.9-final-0, 
default/linux/amd64/17.1/desktop/plasma/systemd, gcc-10.2.0, glibc-2.32, 5.8.1 
x86_64)
=================================================================
                         System Settings
=================================================================
System uname: 
Linux-5.8.1-x86_64-AMD_Ryzen_5_2400G_with_Radeon_Vega_Graphics-with-gentoo-2.7
KiB Mem:    14194336 total,   1928084 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Thu, 20 Aug 2020 18:45:01 +0000
Head commit of repository gentoo: ff03def29006e7148fdf3efbe1ccd8f2ff2c646d
Head commit of repository flatpak-overlay: 
26c396aef4d2f8908eea9b3ad2ccf7dc843a0887

Head commit of repository local:
8e22343ec3e3332f91a6a171a891407c95a0d44d

sh bash 5.0_p18
ld GNU gold (Gentoo 2.34 p6 2.34.0) 1.16
ccache version 3.7.11 [disabled]
app-shells/bash:          5.0_p18::gentoo
dev-java/java-config:     2.3.1::gentoo
dev-lang/perl:            5.30.3-r1::gentoo
dev-lang/python:          2.7.18-r1::gentoo, 3.6.12::gentoo, 3.7.9::gentoo, 
3.8.5::gentoo, 3.9.0_rc1::gentoo
dev-util/ccache:          3.7.11::gentoo
dev-util/cmake:           3.18.1::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.7::gentoo
sys-apps/sandbox:         2.20::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r5::gentoo
sys-devel/automake:       1.13.4-r2::gentoo, 1.16.2::gentoo
sys-devel/binutils:       2.34-r2::gentoo
sys-devel/gcc:            10.2.0::gentoo
sys-devel/gcc-config:     2.3.1::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.3::gentoo
sys-kernel/linux-headers: 5.8::gentoo (virtual/os-headers)
sys-libs/glibc:           2.32::gentoo
Repositories:

gentoo
    location: /var/cache/portage/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.de.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-extra-opts: --new-compress
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-max-age: 24
    sync-rsync-verify-metamanifest: yes

flatpak-overlay
    location: /var/db/repos/flatpak-overlay
    sync-type: git
    sync-uri: https://github.com/fosero/flatpak-overlay.git
    masters: gentoo

crossdev
    location: /var/cache/portage/crossdev
    masters: gentoo
    priority: 100

local
    location: /var/cache/portage/local
    sync-type: git
    sync-uri: https://github.com/devurandom/gentoo-overlay.git
    masters: gentoo
    priority: 1000

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="@FREE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-pipe -O2 -march=znver1"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/grs/systems.conf 
/usr/lib64/libreoffice/program/sofficerc /usr/share/config 
/usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.6/conf"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d 
/etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild 
/etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d 
/etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-pipe -O2 -march=znver1"
DISTDIR="/var/cache/portage/distfiles"
EMERGE_DEFAULT_OPTS="--nospinner"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT 
PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME 
XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs 
buildsyspkg cgroup compressdebug config-protect-if-modified distlocks 
ebuild-locks fakeroot fixlafiles ipc-sandbox merge-sync mount-sandbox 
multilib-strict network-sandbox news parallel-fetch parallel-install 
pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox 
sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch 
userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.spline.inf.fu-berlin.de/mirrors/gentoo/ 
http://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/ http://distfiles.gentoo.org";
LANG="en_GB.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu"
MAKEOPTS="-j6 -l4"
PKGDIR="/var/cache/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_EXTRA_OPTS="--new-compress"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times 
--omit-dir-times --compress --force --whole-file --delete --stats 
--human-readable --timeout=180 --exclude=/distfiles --exclude=/local 
--exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/tmp"
USE="7z 7zip X a52 aac aacplus aacs acl acpi activities aio alsa amd64 
appindicator appstream archive audit avahi ayatana bdplus berkdb blake2 blas 
bluetooth bluray bpf branding brotli bs2b btrfs bzip2 cairo caps cdda cddb cdio 
cdr celt chromaprint cjk clang cli clipboard color-management colord conntrack 
crypt cups d3d9 dav1d dbus declarative device-mapper dirac djvu dri drm dts dvb 
dvd dvdr ed25519 editorconfig egl elf emboss encode epub evdev exif faudio fax 
fbcon fdk ffmpeg fftw filecaps firefox firewalld fish-completion fits flac 
fontconfig fontforge fortran fribidi gamepad gbm gdal gdbm geoclue geolocation 
gif git gles2 gles3 gmp gnome-online-accounts gnupg google googledrive gpg gps 
graphicsmagick gstreamer gtk gtk3 gzip harfbuzz hdf5 heif http2 ibus iconv icu 
idn imlib inotify introspection ipv6 iwd jemalloc jpeg jpeg2k json kde kipi kms 
kwallet ladspa lapack latex lcms libatomic libglvnd libidn2 libinput libnotify 
libproxy libsecret libsoxr libtirpc libvirt lm-sensors lrz lv2 lvm lz4 lzma lzo 
mad mariadb markdown mbim mercurial mjpeg mng mobi modemmanager modplug mp3 mp4 
mpeg mplayer mpris mtp multilib mysql ncurses netlink networkmanager nftables 
nls nptl numa office ofono ofx ogg openal opencl opencv openexr opengl openh264 
openmax openmp opus pam pango pcap pch pcre pcre2 pdf pgo phonon pixman pkcs11 
pkcs7 plasma pm-utils png policykit postscript ppds prison pulseaudio pwquality 
python qml qrcode qt5 raw rdp readline redfish samba sasl scanner schroedinger 
screencast sctp sdl sdl2 seccomp semantic-desktop share smartcard snappy sparse 
speech speex spell spice ssl startup-notification steamruntime stemmer svg 
systemd systemtap tbb tcpd teamd telemetry telepathy tga theora threads 
thunderbolt tiff timezone tmux truetype tslib udev udisks uinput unicode unwind 
upnp upnp-av upower usb utempter v4l v4l2 vaapi vdpau vkd3d vorbis vpx vulkan 
wasm wavpack wayland webchannel webengine webp widgets wireguard wmf woff2 wps 
x264 x265 xattr xcb xinerama xkb xml xmp xrandr xscreensaver xv xvid xwayland 
xxhash xz yaml zeroconf zeromq zimg zlib zstd" ABI_X86="64" 
ADA_TARGET="gnat_2018" ALSA_CARDS="hda-intel" APACHE2_MODULES="authn_core 
authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon 
authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile 
authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock 
deflate dir disk_cache env expires ext_filter file_cache filter headers include 
info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif 
speling status unique_id userdir usertrack vhost_alias" 
CALLIGRA_FEATURES="karbon sheets words" CAMERAS="ptp2" COLLECTD_PLUGINS="df 
interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c 
fma3 mmx mmxext pclmul popcnt rdrand sha sse sse2 sse3 sse4_1 sse4_2 sse4a 
ssse3" ELIBC="glibc" ENLIGHTENMENT_MODULES="*" GPSD_PROTOCOLS="ashtech aivdm 
earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 
nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq 
superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64" 
INPUT_DEVICES="joystick libinput" KERNEL="linux" L10N="de de-DE en en-GB ar fa 
tr ja ko zh zh-CN zh-TW" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 
lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="nlpsolver 
scripting-javascript wiki-publisher" LIRC_DEVICES="devinput" 
LLVM_TARGETS="AMDGPU BPF RISCV WebAssembly" LUA_TARGET="lua5-2" 
OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2 php7-3" 
POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_7" 
PYTHON_TARGETS="python2_7 python3_7 pypy pypy3" QEMU_SOFTMMU_TARGETS="riscv32 
riscv64 x86_64" QEMU_USER_TARGETS="riscv32 riscv64" RUBY_TARGETS="ruby25" 
USERLAND="GNU" VIDEO_CARDS="amdgpu virgl" XTABLES_ADDONS="quota2 psd pknock 
lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit 
sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, LINGUAS, 
PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, 
PORTAGE_COMPRESS_FLAGS

=================================================================
                        Package Settings
=================================================================

media-gfx/hugin-2019.2.0::gentoo was built with the following:
USE="lapack python raw sift -debug" ABI_X86="(64)" L10N="de en-GB ja zh-CN 
zh-TW -ca -ca-valencia -cs -da -es -eu -fi -fr -hu -it -nl -pl -pt-BR -ro -ru 
-sk -sv" PYTHON_SINGLE_TARGET="python3_7 -python3_6 -python3_8"


sci-libs/lapack-3.8.0-r1::gentoo was built with the following:
USE="-deprecated -doc -eselect-ldso -lapacke" ABI_X86="(64)"

Reply at: https://bugs.launchpad.net/hugin/+bug/1892420/comments/2

------------------------------------------------------------------------
On 2020-08-22T07:03:24+00:00 devurandom wrote:

Created attachment 656058
build.log

Reply at: https://bugs.launchpad.net/hugin/+bug/1892420/comments/4


** Changed in: hugin (Gentoo Linux)
       Status: Unknown => New

** Changed in: hugin (Gentoo Linux)
   Importance: Unknown => Medium

-- 
You received this bug notification because you are a member of Hugin
Developers, which is subscribed to Hugin.
https://bugs.launchpad.net/bugs/1892420

Title:
  levmar uses BLAS when built with LAPACK, but Hugin does not link
  against BLAS

Status in Hugin:
  Incomplete
Status in hugin package in Gentoo Linux:
  New

Bug description:
  ```
  hugin-2019.2.0/src/foreign/levmar/misc_core.c:45:#define GEMM 
LM_MK_BLAS_NAME(gemm)
  ```

  This function is a BLAS function:
  https://en.wikipedia.org/wiki/Basic_Linear_Algebra_Subprograms#Level_3

  Thus, since levmar is built as a static library, Hugin itself should
  call `find_package(BLAS)` and `huginbase` should link against
  `BLAS_LIBRARIES`.

  Attached patch fixes this (in an admittedly slightly crude way) for
  me.

To manage notifications about this bug go to:
https://bugs.launchpad.net/hugin/+bug/1892420/+subscriptions

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