Hi,
running the SPIM registration I run into the problem that it is not possible to
open images anymore because of a java.lang.NoSuchMethodError (see full
exception below): ome.xml.model.Experimenter.setDisplayName(Ljava/lang/String;)V
A similar error (setAcquiredDate instead of setDisplayName) can be reproduced
using the Script editor with beanshell and the mitosis.tif (ImageJ example
image):
import loci.formats.ChannelSeparator;
import loci.formats.MetadataTools;
import loci.formats.meta.IMetadata;
import loci.formats.IFormatReader;
final IFormatReader r = new ChannelSeparator();
final IMetadata omexmlMeta = MetadataTools.createOMEXMLMetadata();
r.setMetadataStore( omexmlMeta );
r.setId( "/Users/preibischs/Desktop/mitosis.tif" );
-> Target exception: java.lang.NoSuchMethodError:
ome.xml.model.Image.setAcquiredDate(Ljava/lang/String;)V
Does anyone know why this happens (was fine some days ago)...
Thanks a lot,
Steffi
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at ij.Command.runPlugIn(Command.java:146)
at ij.Command.runCommand(Command.java:95)
at ij.Executer.run(Executer.java:64)
at java.lang.Thread.run(Thread.java:680)
Caused by: java.lang.NoSuchMethodError:
ome.xml.model.Experimenter.setDisplayName(Ljava/lang/String;)V
at
loci.formats.ome.OMEXMLMetadataImpl.setExperimenterDisplayName(OMEXMLMetadataImpl.java:7386)
at
loci.formats.meta.FilterMetadata.setExperimenterDisplayName(FilterMetadata.java:889)
at loci.formats.in.ZeissLSMReader.initMetadata(ZeissLSMReader.java:1192)
at loci.formats.in.ZeissLSMReader.initFile(ZeissLSMReader.java:520)
at loci.formats.FormatReader.setId(FormatReader.java:1091)
at loci.formats.ImageReader.setId(ImageReader.java:682)
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:492)
at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:261)
at mpicbg.imglib.io.LOCI.openLOCIFloatType(LOCI.java:638)
at mpicbg.imglib.io.LOCI.openLOCIFloatType(LOCI.java:583)
at mpicbg.imglib.io.LOCI.openLOCIFloatType(LOCI.java:573)
at mpicbg.imglib.io.LOCI.openLOCIFloatType(LOCI.java:568)
at
fiji.plugin.Bead_Registration.getInteractiveDoGParameters(Bead_Registration.java:673)
at
fiji.plugin.Bead_Registration.getConfiguration(Bead_Registration.java:320)
at fiji.plugin.Bead_Registration.access$100(Bead_Registration.java:40)
at
fiji.plugin.Bead_Registration$1.dialogItemChanged(Bead_Registration.java:208)
at ij.gui.GenericDialog.showDialog(GenericDialog.java:1052)
at
fiji.plugin.Bead_Registration.singleChannel(Bead_Registration.java:265)
at fiji.plugin.Bead_Registration.run(Bead_Registration.java:75)
at ij.IJ.runUserPlugIn(IJ.java:185)
at ij.IJ.runPlugIn(IJ.java:152)
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