Hi again, Curtis! > I sat at work all day today pulling my hair - I could not make it > > work. > > My sincerest apologies for the pain. It is almost certainly due to > problems on the update site, not your configuration. >
Please don't apologize for providing me with tools for science (; I will try it out first thing tomorrow. Pretty much done with developing, now it's time for analysis (: Besides, I like a challenge - although I have to admit this time I was in over my head. Oh, by the way, I'm not sure if the Maven dependencies are all sorted with regards to a certain Jama package... It looks for version 1.0.2 whereas the latest release is 1.0.3 so it cannot be found... I managed to get it working through manually installing 1.0.2. It also works by changing the pom files of VIB-lib, VIB_ and 3D_viewer making them up to date. Having said that I only have a faintest clue of the infrastructure of Maven repositories... Anyway, it didn't help me with my loci (; Sincerely, Jonas > > I have updated the Bio-Formats installation in Fiji to the absolute latest > available, and hopefully ironed out these problems. Can you please run Help > > Update Fiji to install all the updates, and let me know if Bio-Formats > becomes functional for you? > > Thanks, > Curtis > > > On Tue, Dec 11, 2012 at 10:55 AM, Jonas Øgaard <[email protected]> wrote: > >> Hi there, >> >> I have a working version of Fiji running at home (where I'm at now) and >> don't dare to break it, but I sat at work all day today pulling my hair - I >> could not make it work. >> >> I tried fresh downloads (fiji with and without jre), I tried removing one >> LOCI-jar, then the other, then both. I tried updating both fiji and imagej >> in two seperate clean setups, and also tried repeating updates to make sure >> no more components where awaiting updates. >> >> It could be that the java-install is not entirely stable/up-to-date - >> it's running JRE6. Haven't tried 7. >> >> I have no clue. Working from home tomorrow where it's safe & stable! >> >> Sincerely, >> Jonas >> >> >> On Tue, Dec 11, 2012 at 5:47 PM, Curtis Rueden <[email protected]> wrote: >> >>> Hi Jonas, >>> >>> > I am unable to import files with LOCI, no matter which loci-jar is >>> > deleted or not... >>> >>> I updated Fiji with the 4.4.5 release of Bio-Formats last night, so >>> these errors are almost certainly my fault. >>> >>> Unfortunately, I am unable to replicate the problem. I tried updating an >>> existing Fiji on another workstation, and all worked fine (though I did >>> have to click "break the dependency" in response to one prompt). I also >>> tried with a fresh continuous release downloaded from fiji.sc just now, >>> and it also worked. >>> >>> If you run Help > Update Fiji, click on Advanced mode, what do you see >>> for "Locally modified files" and "Uninstalled files only"? A fully >>> up-to-date Fiji should not have any entries. >>> >>> -Curtis >>> >>> >>> On Tue, Dec 11, 2012 at 6:31 AM, <[email protected]> wrote: >>> >>>> Hi! >>>> >>>> I am still having difficulties with the latest Fiji (both w/w/out jre) >>>> and LOCI. Receiving same errors as described above. >>>> >>>> As of now I am unable to import files with LOCI, no matter which >>>> loci-jar is deleted or not... >>>> >>>> Have I magically jinxed my Fiji folder (again) or is this a problem >>>> shared by others? >>>> >>>> Awesome work btw, Johannes (: >>>> >>>> //Jonas >>>> >>>> On Wednesday, August 1, 2012 7:37:26 PM UTC+2, Johannes Schindelin >>>> wrote: >>>> >>>>> Hi Sebi, >>>>> >>>>> On Wed, 1 Aug 2012, [email protected] wrote: >>>>> >>>>> > I tried to download the most up-to-date version ( >>>>> > http://jenkins.imagej.net/job/**Stable-Fiji/** >>>>> lastSuccessfulBuild/artifact/**fiji-nojre.zip<http://jenkins.imagej.net/job/Stable-Fiji/lastSuccessfulBuild/artifact/fiji-nojre.zip>) >>>>> >>>>> > >>>>> > >>>>> > This contains the loci_tools.jar as well as the the individual jars. >>>>> So >>>>> > should i just delete which files? This issues is quite critical for >>>>> us, >>>>> > since the Loci Bio-Format import is cruicial for us (and customer) >>>>> to >>>>> > import the OME-TIFF data produced by our imaging software. >>>>> >>>>> Yes, it is safe to delete loci_tools.jar. My work last year on >>>>> enabling >>>>> multiple update sites introduced the bug that removing files from >>>>> update >>>>> sites does not mark them as obsolete if you updated the files >>>>> successfully >>>>> before. We just did not hit that bug because we did not remove files >>>>> in a >>>>> long time ;-) >>>>> >>>>> > Do you still have an idea when this problem might get solved? >>>>> >>>>> It is fixed in the source code, I just have to upload a new version >>>>> (for >>>>> which I need to be comfortable with the current state first, though >>>>> ;-). >>>>> Should be happening within the hour. >>>>> >>>>> Ciao, >>>>> Dscho >>>>> >>>> >>>> _______________________________________________ >>>> ImageJ-devel mailing list >>>> [email protected] >>>> http://imagej.net/mailman/listinfo/imagej-devel >>>> >>>> >>> >> >
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