Ed Thank you for your response. Looks like this is the solution I was looking for. I checked the links and I just have to work on learning the implementation.
Leoncio On Mon, Mar 31, 2025 at 9:46 AM Edward Evans < [email protected]> wrote: > Hi Leoncio, > > The current version of FLIMJ does not currently support a batch mode. > Unfortunately, trying to use the macro recorder will only produce a useless > macro to start FLIMJ, but not one that could be used to script its > function. There are two main ways to do batch processing using Fiji and > FLIMLib: > > 1. Use flimj-ops: FLIMJ uses flimj-ops and FLIMLib to perform the fitting. > You can use flimj-ops directly in a Fiji script to perform batch processing > on your data. > a. Here's the flimj-ops GitHub repository: > https://github.com/flimlib/flimj-ops > b. Here's a link to the flimj-ops notebooks where you can see how to > use it in a script for fitting data: > https://github.com/flimlib/flimj-ops/tree/master/notebooks > 2. Use SciJava Ops: We recently published our new image > processing/algorithm framework where you can use the same FLIMLib library > that FLIMJ uses to fit your data. > a. Here's a link to our FLIM analysis use case using SciJava Ops and > Fiji: https://ops.scijava.org/en/latest/examples/flim_analysis.html > > I hope that helps. Please let me know if you have any other questions. > > Cheers, > > -Ed > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html
