Dear all ImgaJ experts, I am glad to be here as one memebers of the clients. Moreover, if there is any training/conference in regard to this powerful software, I am passionate to be one of the trainees to scaleup future young scientists more integrated in Agricultural phenomics and genomic works.
On Thu, Apr 3, 2025, 15:35 Leoncio Vergara <[email protected]> wrote: > Ed > > Thank you for your response. Looks like this is the solution I was looking > for. I checked the links and I just have to work on learning the > implementation. > > Leoncio > > On Mon, Mar 31, 2025 at 9:46 AM Edward Evans < > [email protected]> wrote: > > > Hi Leoncio, > > > > The current version of FLIMJ does not currently support a batch mode. > > Unfortunately, trying to use the macro recorder will only produce a > useless > > macro to start FLIMJ, but not one that could be used to script its > > function. There are two main ways to do batch processing using Fiji and > > FLIMLib: > > > > 1. Use flimj-ops: FLIMJ uses flimj-ops and FLIMLib to perform the > fitting. > > You can use flimj-ops directly in a Fiji script to perform batch > processing > > on your data. > > a. Here's the flimj-ops GitHub repository: > > https://github.com/flimlib/flimj-ops > > b. Here's a link to the flimj-ops notebooks where you can see how to > > use it in a script for fitting data: > > https://github.com/flimlib/flimj-ops/tree/master/notebooks > > 2. Use SciJava Ops: We recently published our new image > > processing/algorithm framework where you can use the same FLIMLib library > > that FLIMJ uses to fit your data. > > a. Here's a link to our FLIM analysis use case using SciJava Ops and > > Fiji: https://ops.scijava.org/en/latest/examples/flim_analysis.html > > > > I hope that helps. Please let me know if you have any other questions. > > > > Cheers, > > > > -Ed > > > > -- > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html
