Hi Kedar, I was wrong about the dimensions being off. The itkSCIFIOImageIOTest uses a streaming reader with a default of 4 divisions, thus the size 512 y is correct.
So it's just that the pixel size was being computed incorrectly. I was mapping SCIFIO and ITK pixel/component types incorrectly. Fixed that, and now this conversion test works for me locally. Matt: Curtis said you handled merging work to the SCIFIO branch before. I sent a request for push access to ITK.git but you could also just update http://review.source.kitware.com/#/c/9450/ with the code from my scifio-fixes <https://github.com/hinerm/ITK> branch. Anyway, just let me know if you'd like me to do anything to merge my code back to the ITK repo. I'm considering the SCIFIOImageIO fixed for now. I still want to make both the c++ and java code prettier more manageable, but I don't think I have time to work on that right now, since they're non-functional improvements. Please let me know if you come across any more bugs though! Thanks again, Mark On Wed, Apr 17, 2013 at 2:32 AM, Kedar Grama <[email protected]> wrote: > Hi Mark, > > I turned on the following flags > ITK_USE_64BITS_IDS > ITK_USE_REVIEW > and compiled in Release mode on both windows and linux. > > Thanks, > > -Kedar > > > On Tue, Apr 16, 2013 at 9:28 PM, Mark Hiner <[email protected]> wrote: > >> Hi Kedar, >> >> >>> I just wanted to send a quick note saying that I know Mark is working on >>> this problem. He told me earlier today that he had managed to duplicate the >>> bug (after initial unsuccessful efforts). He will reply back once he has >>> more information. >>> >> >> Just wanted to confirm that I did reproduce the bug. Thanks for verifying >> it works with the normal BF command line tools. I'm hoping it's just a >> problem with the ITKBridgePipes java code. >> >> Looking at the error handling at line 746: >> >> errorMessage += std::string( pipedata, pipedatalength ); >> >> since the keepReading flag isn't changed here, I was thinking that it >> could be eating Java exceptions and then hangs waiting for input that never >> comes, because the Java side has crashed. >> >> Anyway I can't finish testing this tonight because I ruined my ITK >> install and don't have time to rebuild w/ tests. So I will investigate >> tomorrow morning. >> >> Side note - do you adjust any of the cmake flags with your build? >> >> Thanks, >> Mark >> > >
_______________________________________________ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Kitware offers ITK Training Courses, for more information visit: http://kitware.com/products/protraining.php Please keep messages on-topic and check the ITK FAQ at: http://www.itk.org/Wiki/ITK_FAQ Follow this link to subscribe/unsubscribe: http://www.itk.org/mailman/listinfo/insight-developers
