On 11/04/2015 04:08 PM, Alex Williamson wrote:
On Wed, 2015-11-04 at 12:24 -0500, Laine Stump wrote:
Last week I upgraded my Fedora 22 AMD 990FX system from kernel 4.1.10 to
4.2.3 (standard Fedora builds) and multiple devices stopped working:

* 00:14.2 Audio device: Advanced Micro Devices, Inc. [AMD/ATI] SBx00
Azalia (Intel HDA) (rev 40)

* 02:00.[01] Ethernet controller: Intel Corporation 82576 Gigabit
Network Connection

* 01:00.1 Audio device: Advanced Micro Devices, Inc. [AMD/ATI] Cedar
HDMI Audio [Radeon HD 5400/6300 Series]

(The 1st is integrated on the motherboard, the 2nd & 3rd are behind an
AMD RD890 pci-pci bridge. There may be other devices failing, but these
are the ones immediately obvious.)

Whatever is the source of the failure, it ends up that the drivers for
these devices aren't loaded.

At Alex Williamson's suggestion, I tried disabling IOMMU in the BIOS,
and magically all the devices resumed normal operation (except that I
can't do vfio device assignment because the IOMMU is disabled).

Reverting to kernel 4.1.10 very definitely eliminates the problem. I've
also tried kernel 4.2.5 and it has the same problem as 4.2.3 (these
three are the only pre-built kernels for F22). I can provide dmesg /
lspci output from each of these, or any other debug info anyone might
like me to gather.

I built a 4.2.3 kernel for my 990fx system and can't seem to reproduce
it.  Does 'lspci -k' for those devices show any driver?

00:14.2 Audio device: Advanced Micro Devices, Inc. [AMD/ATI] SBx00 Azalia (Intel HDA) (rev 40)
        Subsystem: Gigabyte Technology Co., Ltd Device a132
        Kernel modules: snd_hda_intel
01:00.1 Audio device: Advanced Micro Devices, Inc. [AMD/ATI] Cedar HDMI Audio [Radeon HD 5400/6300 Series]
        Subsystem: Gigabyte Technology Co., Ltd Device aa68
        Kernel modules: snd_hda_intel
02:00.0 Ethernet controller: Intel Corporation 82576 Gigabit Network Connection (rev 01)
        Subsystem: Intel Corporation Gigabit ET Dual Port Server Adapter
        Kernel driver in use: igb
        Kernel modules: igb
02:00.1 Ethernet controller: Intel Corporation 82576 Gigabit Network Connection (rev 01)
        Subsystem: Intel Corporation Gigabit ET Dual Port Server Adapter
        Kernel modules: igb

/sys/devices/pci0000:00/0000:00:04.0/0000:02:00.0 does show a link from driver to ........drivers/igb, but .......:02::00.1 doesn't have a link, and neither of them shows up in /sys/class/net.

Similarly for 01:00.[01] (which are behind the PCI to PCI bridge at 00:02.0), the .0 device does have a link to the radeon driver, but the .1 device (which is the sound device on the radeon video card) has no driver link.

And 00:14.2 (the motherboard integrated sound device) shows no driver link in sysfs either.

Does 'lsmod'
show the drivers loaded, igb and snd_hda_intel?  If not, does manually
modprobe'ing either of those drivers change anything?

Both of those drivers show up in lsmod output.

You haven't
installed a script that writes to driver_override or setup a
configuration where those devices are claimed by pci-stub and forgotten
about it, have you? (it's happened to me)

Not that I'm aware of. /etc/modules.d/local.conf had a few stray very old items that I'd forgotten about, but I removed those and the results are the same.

  Otherwise, dmesg is probably
a good place to start.

Thanks to the uber-verbosity of systemd, this file is about 11MB. Where do you want me to put it?

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