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https://issues.apache.org/jira/browse/SPARK-21392?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16088921#comment-16088921
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Hyukjin Kwon commented on SPARK-21392:
--------------------------------------
Thanks for investigations and details. I tried to reproduce this as below:
{code}
response = "mi_or_chd_5"
data = [[226, None], [442, None], [978, 0], [851, 0], [428, 0]]
spark.createDataFrame(data, "eid: int, mi_or_chd_5:
short").createOrReplaceTempView("outcomes")
df = sql("SELECT eid,mi_or_chd_5 FROM outcomes")
df.write.parquet(response, mode="overwrite")
spark.read.parquet(response).show()
{code}
but I couldn't. Would you mind sharing the output file from {{.write.parquet}}
and checking output files after writing out that via {{.write.csv}} via {{cat}}
?
Also, It would be helpful if you remove out the custom codes parts.
> Unable to infer schema when loading large Parquet file
> ------------------------------------------------------
>
> Key: SPARK-21392
> URL: https://issues.apache.org/jira/browse/SPARK-21392
> Project: Spark
> Issue Type: Bug
> Components: PySpark
> Affects Versions: 2.1.1, 2.2.0
> Environment: Spark 2.1.1. python 2.7.6
> Reporter: Stuart Reynolds
> Labels: parquet, pyspark
>
> The following boring code works up until when I read in the parquet file.
> {code:none}
> response = "mi_or_chd_5"
> sc = get_spark_context() # custom
> sqlc = get_sparkSQLContextWithTables(sc, tables=["outcomes"]) # custom
> rdd = sqlc.sql("SELECT eid,mi_or_chd_5 FROM outcomes")
> print rdd.schema
> #>>
> StructType(List(StructField(eid,IntegerType,true),StructField(mi_or_chd_5,ShortType,true)))
> rdd.show()
> #+-------+-----------+
> #|eid|mi_or_chd_5|
> #+-------+-----------+
> #|226| null|
> #|442| null|
> #|978| 0|
> #|851| 0|
> #|428| 0|
> rdd.write.parquet(response, mode="overwrite") # success!
> rdd2 = sqlc.read.parquet(response) # fail
> {code}
>
> fails with:
> {code:none}AnalysisException: u'Unable to infer schema for Parquet. It must
> be specified manually.;'
> {code}
> in
> {code:none}
> /usr/local/lib/python2.7/dist-packages/pyspark-2.1.0+hadoop2.7-py2.7.egg/pyspark/sql/utils.pyc
> in deco(*a, **kw)
> {code}
> The documentation for parquet says the format is self describing, and the
> full schema was available when the parquet file was saved. What gives?
> The error doesn't happen if I add "limit 10" to the sql query. The whole
> selected table is 500k rows with an int and short column.
> Seems related to: https://issues.apache.org/jira/browse/SPARK-16975, but
> which claims it was fixed in 2.0.1, 2.1.0. (Current bug is 2.1.1)
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