Hi I like Jalview's excellent inter-connection of the alignment view and the phylogenetic tree view. Therefore I would like to use Jalview as a display option for another Java application. After launching Jalview via Java Webstart, I want it to display the sequence alignment plus the evolutionary tree derived from that alignment.
I understand from the docs that I need to use the program option "tree" followed by a tree file. Is it difficult to make such tree file? What kind of format is it. Can it be generated with clustalw or with jalview itself? Or can Jalview take care of making this file which would be most convenient. Many thanks Christoph _______________________________________________ Jalview-discuss mailing list [email protected] http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss
