jalview-discuss  

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• [Jalview-discuss] Announcing our new Jalview discussion forum! Benedict Soares (Staff)
• [Jalview-discuss] Fwd: display problems Mariano Pardo
  • Re: [Jalview-discuss] Fwd: display problems Jim Procter
• Re: [Jalview-discuss] Help with Jalview Benedict Soares (Staff)
• [Jalview-discuss] Sever Error! MUSCLE Web service in Jalview PIYAPAT SITTHISAK
  • Re: [Jalview-discuss] Sever Error! MUSCLE Web service in Jalview James Procter (Staff)
• [Jalview-discuss] Yet another test Benedict Soares (Staff)
• [Jalview-discuss] installation difficulty Rigden, Dan
• [Jalview-discuss] Apologies, a test email! Benedict Soares (Staff)
• [Jalview-discuss] A test 2021-05-25 18:27 Benedict Soares (Staff)
• [Jalview-discuss] Accidental email about Jalview Discourse activation Benedict Soares (Staff)
• [Jalview-discuss] Colour by conservation problem Luca Pellegrini
  • Re: [Jalview-discuss] Colour by conservation problem Benedict Soares (Staff)
  • Re: [Jalview-discuss] Colour by conservation problem Geoffrey Barton (Staff)
  • Re: [Jalview-discuss] Colour by conservation problem Luca Pellegrini
  • Re: [Jalview-discuss] Colour by conservation problem Benedict Soares (Staff)
  • Re: [Jalview-discuss] Colour by conservation problem James Procter (Staff)
  • Re: [Jalview-discuss] Colour by conservation problem Eric Martz
• [Jalview-discuss] Build prints exception messages and then succeeds Yuri
  • Re: [Jalview-discuss] Build prints exception messages and then succeeds Jim Procter
  • Re: [Jalview-discuss] Build prints exception messages and then succeeds Benedict Soares (Staff)
  • Re: [Jalview-discuss] Build prints exception messages and then succeeds Yuri
• [Jalview-discuss] Are build instructions available? Yuri
• Re: [Jalview-discuss] Help with colouring scheme and column selection James Procter
• [Jalview-discuss] Jalview patch release now available: Version 2.11.1.1 James Procter
• [Jalview-discuss] Custom or modified annotations Heather E. Driscoll
  • Re: [Jalview-discuss] Custom or modified annotations James Procter
• [Jalview-discuss] Problems installing on Mac Misti Persaud
  • Re: [Jalview-discuss] Problems installing on Mac Benedict Soares (Staff)
  • Re: [Jalview-discuss] Problems installing on Mac Romain Studer
• [Jalview-discuss] How to change numbering on my alignment? Kate Kim
  • Re: [Jalview-discuss] How to change numbering on my alignment? Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] How to change numbering on my alignment? James Procter
  • Re: [Jalview-discuss] How to change numbering on my alignment? Kate Kim
• [Jalview-discuss] problem with some features, windows 10 Maria D'Amato
  • Re: [Jalview-discuss] problem with some features, windows 10 (hiDPI and Cygwin!) James Procter
• [Jalview-discuss] Jalview on multiuser systems Brian Fristensky
  • Re: [Jalview-discuss] Jalview on multiuser systems Benedict Soares (Staff)
  • Re: [Jalview-discuss] Jalview on multiuser systems Brian Fristensky
  • Re: [Jalview-discuss] Jalview on multiuser systems Jim Procter
• [Jalview-discuss] sorting by sequence selection Roland Dunbrack
  • Re: [Jalview-discuss] sorting by sequence selection Romain Studer
  • Re: [Jalview-discuss] sorting by sequence selection Benedict Soares (Staff)
  • Re: [Jalview-discuss] sorting by sequence selection Roland Dunbrack
• [Jalview-discuss] need some guidance Dimitris Hatzopoulos
  • Re: [Jalview-discuss] need some guidance Jim Procter
• [Jalview-discuss] Alignment : "job failed" Morgane Bonade
  • Re: [Jalview-discuss] Alignment : "job failed" Jim Procter
• [Jalview-discuss] Left-justifying sequence region Roland Dunbrack
  • Re: [Jalview-discuss] Left-justifying sequence region Jim Procter
  • Re: [Jalview-discuss] Left-justifying sequence region Roland Dunbrack
  • Re: [Jalview-discuss] Left-justifying sequence region Jim Procter
• [Jalview-discuss] hello Dimitris Hatzopoulos
• Re: [Jalview-discuss] jalview help needed James Procter
• [Jalview-discuss] Jalview 2.11.1.0 release and workshop next week James Procter
• [Jalview-discuss] Jalview Test Releases ! Help Wanted testing Jalview 2.11.1.0! James Procter
• [Jalview-discuss] Problem with jabaws? David Martin (Staff)
  • Re: [Jalview-discuss] Problem with jabaws? Jim Procter
• [Jalview-discuss] Command line input kajal pande
  • Re: [Jalview-discuss] Command line input Jim Procter
  • Re: [Jalview-discuss] Command line input Jim Procter
• [Jalview-discuss] bio.tools record for jalview Benedict Soares (Staff)
  • Re: [Jalview-discuss] bio.tools record for jalview Matus Kalas
• [Jalview-discuss] Help needed - Marking up a list of peptides onto a protein alignment Manoj Kumar
  • Re: [Jalview-discuss] Help needed - Marking up a list of peptides onto a protein alignment Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] Help needed - Marking up a list of peptides onto a protein alignment Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] Help needed - Marking up a list of peptides onto a protein alignment Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] Help needed - Marking up a list of peptides onto a protein alignment Mungo Carstairs (Staff)
• [Jalview-discuss] help on jalview SE H
  • Re: [Jalview-discuss] help on jalview Benedict Soares (Staff)
• [Jalview-discuss] Changing window titles David Martin (Staff)
  • Re: [Jalview-discuss] Changing window titles Jim Procter
• Re: [Jalview-discuss] Jalview Fetch Sequences Geoff Barton
  • Re: [Jalview-discuss] Jalview Fetch Sequences Geoff Barton
• [Jalview-discuss] 2D annotated map of secondary structures elements Ahmad Khalifa
  • Re: [Jalview-discuss] 2D annotated map of secondary structures elements Jim Procter
  • Re: [Jalview-discuss] 2D annotated map of secondary structures elements Ahmad Khalifa
  • Re: [Jalview-discuss] 2D annotated map of secondary structures elements James Procter (Staff)
• [Jalview-discuss] A test Benedict Soares (Staff)
• [Jalview-discuss] Jalview not loading Mark Saper
  • Re: [Jalview-discuss] Jalview not loading Jim Procter
• [Jalview-discuss] Problem with sequence features file Atkinson, Samantha
  • Re: [Jalview-discuss] Problem with sequence features file Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] Problem with sequence features file Atkinson, Samantha
  • Re: [Jalview-discuss] Problem with sequence features file Mungo Carstairs (Staff)
• [Jalview-discuss] Ensembl services maintenance today Mungo Carstairs (Staff)
• [Jalview-discuss] how to see species names roisin mcallister
  • Re: [Jalview-discuss] how to see species names Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] how to see species names Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] how to see species names Jim Procter
• [Jalview-discuss] Jalview 2.11 - new installer and new capabilities! Jim Procter
• Re: [Jalview-discuss] Web services issue Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] Web services issue James Procter (Staff)
• [Jalview-discuss] load annotations or future file Nail Besli
  • Re: [Jalview-discuss] load annotations or future file Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] load annotations or future file James Procter (Staff)
  • Re: [Jalview-discuss] load annotations or future file Geoff Barton
  • Re: [Jalview-discuss] load annotations or future file Geoff Barton
  • [Jalview-discuss] Jalview support for PDBe-kb annotations (was Re: load annotations or future file) Jim Procter
  • Re: [Jalview-discuss] load annotations or future file Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] load annotations or future file Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] load annotations or future file Mungo Carstairs (Staff)
• [Jalview-discuss] updated installers for 2.11 - please try out the latest pre-release ! Jim Procter
  • Re: [Jalview-discuss] updated installers for 2.11 - please try out the latest pre-release ! Jim Procter
  • Re: [Jalview-discuss] updated installers for 2.11 - please try out the latest pre-release ! Geoff Barton
  • Re: [Jalview-discuss] updated installers for 2.11 - please try out the latest pre-release ! Christian Cole (Staff)
• [Jalview-discuss] jalview with ubuntu 18.04 Maik Engeholm
  • Re: [Jalview-discuss] jalview with ubuntu 18.04 James Procter (Staff)
  • Re: [Jalview-discuss] jalview with ubuntu 18.04 Benedict Soares (Staff)
• [Jalview-discuss] Finding alignment and moving it to the top of the list Ahmad Khalifa
  • Re: [Jalview-discuss] Finding alignment and moving it to the top of the list Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] Finding alignment and moving it to the top of the list James Procter (Staff)
• [Jalview-discuss] retrieving reviewed sequences from Uniprot James Procter (Staff)
• Re: [Jalview-discuss] Show numbering of reference sequence in upper scale (feature request) Jim Procter
• [Jalview-discuss] Export fails for big alignment Ahmad Khalifa
  • Re: [Jalview-discuss] Export fails for big alignment Mungo Carstairs (Staff)
• [Jalview-discuss] How to plot hydrophobicity in multiple sequence alignment Dr. Rohit Jain
  • Re: [Jalview-discuss] How to plot hydrophobicity in multiple sequence alignment Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] How to plot hydrophobicity in multiple sequence alignment Mungo Carstairs (Staff)
• [Jalview-discuss] Jalview Freezing David Martin (Staff)
  • Re: [Jalview-discuss] Jalview Freezing Mungo Carstairs (Staff)
• [Jalview-discuss] Zooming in Jalview David Guttman
  • Re: [Jalview-discuss] Zooming in Jalview Jim Procter
  • Re: [Jalview-discuss] Zooming in Jalview David Guttman
  • Re: [Jalview-discuss] Zooming in Jalview Geoff Barton
• [Jalview-discuss] Retrieve score for conservation at the individual amino acid level Romain Studer
  • Re: [Jalview-discuss] Retrieve score for conservation at the individual amino acid level Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] Retrieve score for conservation at the individual amino acid level Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] Retrieve score for conservation at the individual amino acid level Romain Studer
  • Re: [Jalview-discuss] Retrieve score for conservation at the individual amino acid level Geoff Barton
  • Re: [Jalview-discuss] Retrieve score for conservation at the individual amino acid level Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] Retrieve score for conservation at the individual amino acid level Romain Studer
• [Jalview-discuss] Launching Jalview via JNLP Mathieu Dubois
  • Re: [Jalview-discuss] Launching Jalview via JNLP Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] Launching Jalview via JNLP Jim Procter
  • Re: [Jalview-discuss] Launching Jalview via JNLP Mathieu Dubois
  • Re: [Jalview-discuss] Launching Jalview via JNLP Jim Procter
  • Re: [Jalview-discuss] Launching Jalview via JNLP Mathieu Dubois
• Re: [Jalview-discuss] can't download JalView James Procter (Staff)
  • Re: [Jalview-discuss] can't download JalView Sha Coleman
  • Re: [Jalview-discuss] can't download JalView Jim Procter
• [Jalview-discuss] Phosphorylation site prediction #BOGDANOVIC NEBOJSA#
  • Re: [Jalview-discuss] Phosphorylation site prediction James Procter (Staff)
• [Jalview-discuss] Phosphorylation of bacterial proteins #BOGDANOVIC NEBOJSA#
  • Re: [Jalview-discuss] Phosphorylation of bacterial proteins Jim Procter
• [Jalview-discuss] Jalview 2.10.5 release now available Jim Procter
• [Jalview-discuss] Image export in EPS LineArt format on Mac does not work Petya Violinova Krasteva
  • Re: [Jalview-discuss] Image export in EPS LineArt format on Mac does not work Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] Image export in EPS LineArt format on Mac does not work Jim Procter
  • Re: [Jalview-discuss] Image export in EPS LineArt format on Mac does not work Petya Violinova Krasteva
  • Re: [Jalview-discuss] Image export in EPS LineArt format on Mac does not work Mungo Carstairs (Staff)
• [Jalview-discuss] Issues with Insertions in Secondary Structure Annotation Vonyx Crystal
  • Re: [Jalview-discuss] Issues with Insertions in Secondary Structure Annotation Jim Procter
• Re: [Jalview-discuss] RNA Secondary Structure Annotation bug Jim Procter
• [Jalview-discuss] losing stop codons Juan Carlos Sanchez
  • Re: [Jalview-discuss] losing stop codons Jim Procter
  • Re: [Jalview-discuss] losing stop codons Juan Carlos Sanchez
• [Jalview-discuss] Pairwise alignment not working reliably in 2.10.4b1 Mark Saper
  • [Jalview-discuss] Pairwise alignment not working reliably in 2.10.4b1 Mark Saper
  • Re: [Jalview-discuss] Pairwise alignment not working reliably in 2.10.4b1 Jim Procter
• [Jalview-discuss] Changing Protein to Nucleotide Sequence Vonyx Crystal
  • Re: [Jalview-discuss] Changing Protein to Nucleotide Sequence Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] Changing Protein to Nucleotide Sequence Mungo Carstairs (Staff)
• [Jalview-discuss] Jalview 2.10.4b1 patch release James Procter
• [Jalview-discuss] Jalview 2.10.4 is now available on www.jalview.org Jim Procter
• [Jalview-discuss] Jalview & Protein Structure and Function Prediction workshop: U. Liverpool - May 14-15th James Procter
• Re: [Jalview-discuss] Alignments Geoff Barton
  • Re: [Jalview-discuss] Alignments Geoff Barton
  • Re: [Jalview-discuss] Alignments Geoff Barton
  • Re: [Jalview-discuss] Alignments Geoff Barton
  • Re: [Jalview-discuss] Alignments Geoff Barton
  • Re: [Jalview-discuss] Alignments Geoff Barton
• [Jalview-discuss] Jalview properties file : documentation ? Martin Raden
  • Re: [Jalview-discuss] Jalview properties file : documentation ? James Procter
  • Re: [Jalview-discuss] Jalview properties file : documentation ? Martin Raden
  • Re: [Jalview-discuss] Jalview properties file : documentation ? James Procter
  • Re: [Jalview-discuss] Jalview properties file : documentation ? Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] Jalview properties file : documentation ? James Procter
• [Jalview-discuss] JABAWS server down ? (Re: Jalview alignment issues) James Procter
  • Re: [Jalview-discuss] JABAWS server down ? (Re: Jalview alignment issues) Kira Mourao (Staff)
• [Jalview-discuss] Can't stop long-running tree calculation Christian Cole (Staff)
  • Re: [Jalview-discuss] Can't stop long-running tree calculation Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] Can't stop long-running tree calculation Christian Cole (Staff)
  • Re: [Jalview-discuss] Can't stop long-running tree calculation Jim Procter
• [Jalview-discuss] Jalview 2.10.3b1 release: patches critical bugs for 2.10.3 Jim Procter
• [Jalview-discuss] Jabaws server offline David Martin (Staff)
  • Re: [Jalview-discuss] Jabaws server offline Mungo Carstairs (Staff)
  • Re: [Jalview-discuss] Jabaws server offline Geoff Barton
• [Jalview-discuss] Status of JAL-2788 Mark Saper
  • Re: [Jalview-discuss] Status of JAL-2788 Kira Mourao (Staff)
• [Jalview-discuss] remove /start-end extention from output fasta files xavier bailly
  • Re: [Jalview-discuss] remove /start-end extention from output fasta files Jim Procter
  • Re: [Jalview-discuss] remove /start-end extention from output fasta files Jim Procter
• [Jalview-discuss] Group consensus logo from command line Jens Georg
  • Re: [Jalview-discuss] Group consensus logo from command line Jim Procter
• [Jalview-discuss] jalview v1.12.2b2 @bioconda Martin Raden
• [Jalview-discuss] initial bioconda integration Martin Raden
• [Jalview-discuss] [website] docu error Martin Raden
• [Jalview-discuss] install from commandline without GUI possible? Martin Raden
  • Re: [Jalview-discuss] install from commandline without GUI possible? Martin Raden

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