Hi Martin. On 20/02/2018 12:54, Martin Raden wrote: > is there some (online) documentation about the "properties file" that > can be set via the commandline arguments?
Not exactly (I feel like I've written this before ;) ). There is source level documentation for what gets written to/read from the properties file, but our working model with Jalview has always been that users would configure defaults for opening/viewing alignment data via the Preferences GUI, and copy their .jalview_properties file and pass it in via the -props argument if they want to run Jalview from the CLI in a reproducible way. > > There is no link (on the CLI page) and Google didnt provided any hit > neither... ;) there are lots of hints and tips that ought to be aggregated somewhere, but some of those are version specific. Is there something you'd like to configure that isn't available via Preferences ? Jim -- ------------------------------------------------------------------- Dr JB Procter, Jalview Coordinator, The Barton Group Division of Computational Biology, School of Life Sciences University of Dundee, Dundee DD1 5EH, UK. +44 1382 388734 | www.jalview.org | www.compbio.dundee.ac.uk The University of Dundee is a registered Scottish Charity, No: SC015096 _______________________________________________ Jalview-discuss mailing list [email protected] http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss
