Hello! I'm trying to align RNA sequences and had a few questions. The first, currently Jalview automatically identifies sequences as DNA or RNA depending on the AGCT content. Is it possible to force Jalview to view a sequence as a nucleotide sequence rather than a protein? (like a setting or command to do so). Our sequences have metacharacters and 'N's in them that confuses Jalview into thinking its a protein.
My second question is somewhat simple. Is there a way that Jalview can turn all the 'T's in a sequence (DNA) into 'U's (RNA)? Thanks, Vaish
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