Hello Dave,
Any errors showing in the Java console? Does your ~/.jalview_properties file have a line RELAXEDSEQIDMATCHING=true - if so, you try removing this. It may trigger some highly nested 'fuzzy matching' of sequence ids (in the features file) to ids or cross-references of sequences in the alignment. It should simply ignore any features for sequences not in the alignment. If you can pass me your project file and features file I can look further into this. Thanks, Mungo [University of Dundee shield logo]<http://uod.ac.uk/sig-home> Mungo Carstairs Jalview Computational Scientist The Barton Group Division of Computational Biology School of Life Sciences University of Dundee, Dundee, Scotland, UK www.jalview.org<http://www.jalview.org> www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk> [email protected]<mailto:[email protected]> [University of Dundee Facebook]<http://uod.ac.uk/sig-fb> [University of Dundee Twitter] <http://uod.ac.uk/sig-tw> [University of Dundee LinkedIn] <http://uod.ac.uk/sig-li> [University of Dundee YouTube] <http://uod.ac.uk/sig-yt> [University of Dundee Instagram] <http://uod.ac.uk/sig-ig> [University of Dundee Snapchat] <http://uod.ac.uk/sig-sc> We're Scottish University of the Year again!<http://uod.ac.uk/sig-strapline> The Times / Sunday Times Good University Guide 2016 and 2017 ________________________________ From: [email protected] <[email protected]> on behalf of David Martin (Staff) <[email protected]> Sent: 11 February 2019 18:11:50 To: [email protected] Subject: [Jalview-discuss] Jalview Freezing I’m trying to persuade Jalview to behave but it keeps freezing on me. Windows 7 (Dundee Uni staff desktop). I open a saved project with many windows, each containing a pair of sequences for aligning or a single sequence. I try to load a features file which maps sequencing quality onto the sequences. There are sequences referred to in the JFF that do not exist in the alignment. Jalview just freezes completely. Nothing on the console, no response at all to the mouse. Any suggestiosn? Is it trying to ID match all the unattached annotations? How can I stop it doing this? ..d The University of Dundee is a registered Scottish Charity, No: SC015096 The University of Dundee is a registered Scottish Charity, No: SC015096
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